[Biopython-dev] Brad's GFF parser in a Biopython repository

[Brad Chapman]

Peter;
Awesome, thanks for doing this. I didn't even realize there was a
git solution that could transfer histories across repositories like
this; how did you do it?

Everything looks great on a first pass. Do you think some of the
scripts would also be useful to include in the script directory?
They handle some of the common cases people have asked about;
'access_gff_index.py' uses bx-python so might be excluded, but the
others are Biopython specific.

Thanks again,
Brad

> I managed to do a git script to select out the GFF code and tests from
> your bcbb repository and get it into the Biopython source tree. The
> folder changes made it interesting ;)
> 
> Input: https://github.com/chapmanb/bcbb (master branch)
> 
> Output: https://github.com/peterjc/biopython/tree/brad_gff
> 
> The tests pass, but that is as far as I have got with this. Brad,
> could you have a look at this new branch for sanity checking please?
> 
> Peter