[Biopython-dev] [Biopython - Feature #3216] (New) Bio.Phylo.Applications support for PhyML

redmine at redmine.open-bio.org redmine at redmine.open-bio.org
Thu Apr 28 02:24:28 UTC 2011


Issue #3216 has been reported by Eric Talevich.

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Feature #3216: Bio.Phylo.Applications support for PhyML
https://redmine.open-bio.org/issues/3216

Author: Eric Talevich
Status: New
Priority: Low
Assignee: Eric Talevich
Category: Main Distribution
Target version: Not Applicable
URL: http://www.atgc-montpellier.fr/phyml/


PhyML is another popular tool for inferring phylogenies by maximum likelihood, and can be also be considered reasonably best-practice (alongside RAxML, which isn't yet packaged). The Debian package for PhyML was recently updated to the latest version (3.0), and should be trickling down to the distros soon.

Let's create a wrapper for it in Biopython. The input is just a Phylip alignment, so this should be easier than MrBayes.


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