[Biopython-dev] Documentation

Peter biopython at maubp.freeserve.co.uk
Tue Jul 13 23:04:28 UTC 2010


On Tue, Jul 13, 2010 at 11:24 PM, Vince S. Buffalo <vsbuffalo at gmail.com> wrote:
> Hi All,
>
> I'd like to become more active in the Biopython project, and porting the
> documentation to Sphinx seems like an excellent way to begin. Is there a
> wiki or other website for allocating docstrings/other documentation to be
> rewritten in reStructuredText?
>
> Vince

Hi Vince,

Volunteers to help would be great. In terms of a wiki or website system,
I guess you are aware of or have used the NumPy system. They put a
lot of effort into setting up a workflow to edit docstrings via a wiki, before
manual merging into the code base. We don't have anything like that.

For now, it would be a case of making a fork on github, and editing
Python source code files one by one to convert their docstrings into
reStructuredText (plus checking the output works in epydoc, and
making sure this doesn't break any doctests). We'd then be able
to pull your changes into the trunk (manually).

Are you familiar with git, github, epydoc and/or Sphinx?

Regards,

Peter



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