[Biopython-dev] Release plans for Biopython 1.55 (beta)?

Peter biopython at maubp.freeserve.co.uk
Mon Aug 16 13:10:30 UTC 2010


On Sat, Aug 14, 2010 at 3:23 AM, Michiel de Hoon <mjldehoon at yahoo.com> wrote:
> I'm OK with a new release, provided we can fix the test errors.

I've sorted out test_NCBI_BLAST_tools.py, BLAST 2.2.23+ added
-off_diagonal_range  to blastn, but more puzzlingly appears to have
removed -gapextend, -gapopen, -xdrop_gap, and -xdrop_gap_final
from tblastx. This might be something to double check with the NCBI.

Peter



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