[Biopython-dev] [Bug 3069] More robust feature parser for GenBank/EMBL records

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Thu Apr 29 08:00:51 UTC 2010


http://bugzilla.open-bio.org/show_bug.cgi?id=3069





------- Comment #5 from biopython-bugzilla at maubp.freeserve.co.uk  2010-04-29 04:00 EST -------
Rather than formalising this as a sub-format or EMBL variant I would rather
encourage the IMGT to fix their file to follow the EMBL standard. Correcting
the indentation shouldn't be too hard - the potential problem will be
contracting too long feature keys that can't fit into the EMBL allocated field.

It would also be interesting to see how BioPerl etc handle these out-of-spec
files.


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