[Biopython-dev] [Bug 3047] PhyloXML, behavior on setting color and width doesn't match docstring or spec

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=3047


eric.talevich at gmail.com changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|NEW                         |RESOLVED
         Resolution|                            |FIXED




------- Comment #9 from eric.talevich at gmail.com  2010-04-07 20:49 EST -------
(In reply to comment #8 by Peter)
> (In reply to comment #7 by Eric)
> > That's my interpretation of it -- the color attribute is meant to be handled
> > that way by whatever code uses it for drawing.
> > 
> > Which means two things should happen before closing this bug:
> > 
> >  - Change the docstring to indicate *user code* is supposed to handle colors
> > and widths in a cascading fashion
> > 
> >  - Fix draw_graphviz (actually to_networkx) to cascade colors down branches,
> > like the Archaeopteryx GUI does
> 
> So the Bio.Phylo drawing code (using NetworkX) doesn't cascade the
> colors/widths yet?

It does now:
http://github.com/biopython/biopython/commit/1ea0c921c9bea6acb2b6b41566383fc54ed4862f

(and preceding commits -- sorry about the weight/width mixup)


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