[Biopython-dev] Seq object ungap method
Peter
biopython at maubp.freeserve.co.uk
Fri Nov 6 14:00:08 EST 2009
Hi all,
Something we discussed last year was adding an ungap method
to the Seq object. See for example this thread:
http://lists.open-bio.org/pipermail/biopython/2008-September/004515.html
I've (finally) taken the time to actually implement this, and have
posted it on a github branch for comment:
http://github.com/peterjc/biopython/tree/ungap
The code includes a selection of examples in the docstring
which double as doctests. You can read this online here:
http://github.com/peterjc/biopython/commit/13de9f793d13d3c9485f8d7cc42a48b99613d931
Peter
[At some point we may want to move some of the assorted
private functions in Bio.Alphabet into (private) methods of
the alphabet objects or something... we'll see.]
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