[Biopython-dev] [Bug 2840] When a record has been loaded from BioSQL, trying to save it to another database fails with loader db_loader.load_seqrecord in _load_reference

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2840


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|NEW                         |RESOLVED
         Resolution|                            |FIXED




------- Comment #8 from biopython-bugzilla at maubp.freeserve.co.uk  2009-06-03 10:39 EST -------
(In reply to comment #6)
> Note - there are four known failures in test_BioSQL.py right now, a mixed
> strand feature in NC_000932.gb (which triggers two failures), the project
> cross reference in NC_005816.gb, and a sub-feature location reference in
> one_of.gb -- these are all unrelated to this issue (Bug 2840).

Just to note these are now fixed in CVS - they where mostly to do with writing
GenBank files with Bio.SeqIO (I was testing writing using DBSeqRecord objects
pulled out of BioSQL).

(In reply to comment #7)
> (In reply to comment #6)
> > This is now fixed in CVS, plus there are now additional unit tests.  For
> > the fix, I have used a slight variation of Cymon's patch. Does this look
> > sensible Cymon?
> 
> Works for me.
> C.

Great - marking this bug as fixed.

Peter


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