[Biopython-dev] Structure and LDNe

Peter rhythmbox-devel at maubp.freeserve.co.uk
Tue Jan 6 10:01:34 UTC 2009


On Tue, Jan 6, 2009 at 12:48 AM, Tiago Antão <tiagoantao at gmail.com> wrote:
> Hi all,
>
> Jason Eshleman (he subscribes to this list also) has made available
> code to interact with Structure (a widely used application in
> population genetics - the 2 papers related to it have around 3000
> citations acording to Google scholar). We will try to convert his code
> to the Bio.PopGen namespace, create documentation and test cases.
> To this adds the exsiting LDNe code (mine). This all should be ready
> in a reasonably fast time frame (I suppose before the next release).

That sounds good :)

> The all important statistics part is still due, I am afraid (I don't
> know if anybody has looked at the beta code on git). But at least this
> LDNe and Structure code will be ready to go soon.
>
> Tiago

I haven't looked at any of your code on git - and I probably won't
have any spare time till next week.  But anyway, do you have the URL
handy?

Thanks

Peter




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