[Biopython-dev] [Bug 2507] Adding __getitem__ to SeqRecord for element access and slicing

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Wed Feb 25 15:42:25 UTC 2009


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
 Attachment #998 is|0                           |1
           obsolete|                            |

------- Comment #12 from biopython-bugzilla at maubp.freeserve.co.uk  2009-02-25 10:42 EST -------
Created an attachment (id=1249)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=1249&action=view)
Patch to SeqRecord.py and SeqFeature.py

This updates the old patch (which no longer applied cleanly to CVS), and
implements per-letter-annotation with a restricted dictionary as discussed on
the mailing list.  The precise name for the publicly exposed
per-letter-annotation dictionary is still open to debate, here I have used
letter_annotation - see the mailing list for more:

This includes a lengthy doctest on the SeqRecord __getitem__ method, but
further additions to the unit tests would be wise.

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