[Biopython-dev] Quality scores (and per-letter-annotation) in a SeqRecord?

Peter biopython at maubp.freeserve.co.uk
Mon Feb 23 14:24:04 UTC 2009


On Mon, Feb 23, 2009 at 1:50 PM, Giovanni Marco Dall'Olio
<dalloliogm at gmail.com> wrote:
>
> I suggest you to use github or any distribuited source versioning
> system to test the changes you are describing in this discussion.
>
> ...
>
> I think that it is easier to discuss over this if you can show how the
> code would look like instead of only describing it.

Or we can stick with the old fashioned approach of uploading patches
to bugzilla.  This proposal only requires additions to
Bio/SeqRecord.py to define the new property, and won't change much
existing code at all.

I can see there are benefits to using a distributed source version
system for  more complicated patches touching lots of files, but it
isn't needed here and (if you don't have git installed) using github
might it actually make it harder for people to try the code on their
local machine.

Peter



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