[Biopython-dev] [Bug 2772] New: Entrez.efetch: the default value of 'retmode' depends on the database

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Fri Feb 20 17:16:49 UTC 2009


http://bugzilla.open-bio.org/show_bug.cgi?id=2772

           Summary: Entrez.efetch: the default value of 'retmode' depends on
                    the database
           Product: Biopython
           Version: 1.49b
          Platform: PC
        OS/Version: Linux
            Status: NEW
          Severity: normal
          Priority: P5
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: dalloliogm at gmail.com


minor issue: Entrez.efetch and Entrez.esummary have different 'retmode' default
values.

This sometimes is confusing for the users.

>>> Entrez.esummary(db='snp', id=1).readline()
<?xml...?>

>>> Entrez.efetch(db='snp', id=1).readline()
<html>


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