[Biopython-dev] [Bug 2759] New: Unit test for Bio.PDB.HSExposure

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Thu Feb 12 13:11:10 UTC 2009


           Summary: Unit test for Bio.PDB.HSExposure
           Product: Biopython
           Version: Not Applicable
          Platform: PC
        OS/Version: All
            Status: NEW
          Severity: enhancement
          Priority: P2
         Component: Unit Tests
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: biopython-bugzilla at maubp.freeserve.co.uk

Prompted by looked at the example script hsexpo, I've written a unittest based
test for the Bio.PDB.HSExposure.

I haven't checked it in yet because it prints out looks of warnings to stderr
about oddities in the PDB file.  We could either add a clean PDB file to the
examples, or do something with the stderr.

Note that the print-and-compare style test_PDB.py deals this this itself. 
Perhaps run_tests.py should do something similar for the unittest based cases.

See also Bug 2754 which would actually make Bio.PDB print even more warnings to

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