[Biopython-dev] [Bug 2634] New: PAM30 Matrix doesn't work with

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2634

           Summary: PAM30 Matrix doesn't work with
           Product: Biopython
           Version: 1.48
          Platform: PC
        OS/Version: Mac OS
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: ngcrawfo at bu.edu


I send it this code:
result_handle = NCBIWWW.qblast("blastp", "nr", seq_record.seq.tostring(),
matrix_name = 'PAM30', word_size='2', expect='30000',
composition_based_statistics='no adjustment')

And I get this:

ValueError: invalid literal for int() with base 10: 

function qblast in NCBIWWW.py at line 769
rid, rtoe = _parse_qblast_ref_page(handle)
function _parse_qblast_ref_page in NCBIWWW.py at line 828
return rid, int(rtoe)

Note: if I change the matrix name to 'PAM70' or BlOSUM62 there is no error. 
I'm trying to emulate the short sequence parameters in BLAST so I need to use
PAM30


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