[Biopython-dev] [Bug 2502] PSIBlastParser fails with blastpgp 2.2.18 though works with blastpgp 2.2.15

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2502





------- Comment #12 from biopython-bugzilla at maubp.freeserve.co.uk  2008-05-23 11:25 EST -------
You are right - it is the extra reference which was causing the failure.

I've checked in a fix to Bio/Blast/NCBIStandalone.py with CVS revision 1.72

Could you update your Biopython installation to CVS and retest?  Or just
replace /home/mortiz/Progs//lib/python/Bio/Blast/NCBIStandalone.py with
revision 1.72 from the ViewCVS website once its updated:
http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/biopython/Bio/Blast/NCBIStandalone.py?cvsroot=biopython

(I haven't closed this bug yet - I'd like your confirmation that this fixes
things, adding a new test case would probably be wise.)


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