[Biopython-dev] [Bug 2502] PSIBlastParser fails with blastpgp 2.2.18 though works with blastpgp 2.2.15

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2502





------- Comment #7 from ibdeno at gmail.com  2008-05-23 08:38 EST -------
Unfortunately the hypothesis was not correct.
If I create an intermediate file, the parser works well if the file comes from
blastpgp 2.2.15 but chokes on 2.2.18.

There is a new reference in 2.2.18 header:

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


which falls between the two ones existing in the 2.2.15 version and makes the
header longer in terms of number of lines... Might be this?


Miguel

(In reply to comment #6)


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