June 2008 Archives by subject

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Starting: Mon Jun 2 04:19:50 EDT 2008
Ending: Mon Jun 30 18:51:17 EDT 2008
Messages: 199

• [Biopython-dev] [BioPython] Bio.CDD, anyone?   Michiel de Hoon
• [Biopython-dev] [BioPython] Ace contig files in Bio.SeqIO or Bio.AlignIO   Jose Blanca
• [Biopython-dev] [BioPython] Ace contig files in Bio.SeqIO or Bio.AlignIO   Peter
• [Biopython-dev] [BioPython] Bio.SCOP.FileIndex   Peter
• [Biopython-dev] [BioPython] Bio.SCOP.FileIndex   Michiel de Hoon
• [Biopython-dev] [BioPython] Bio.SCOP.FileIndex   Michiel de Hoon
• [Biopython-dev] [BioPython] Entrez   Peter
• [Biopython-dev] [BioPython] Fwd: NCBI Abuse Activity with BioPython   Peter
• [Biopython-dev] [BioPython] Fwd: NCBI Abuse Activity with BioPython   Peter
• [Biopython-dev] [BioPython] Fwd: NCBI Abuse Activity with BioPython   Peter
• [Biopython-dev] [Bug 1944] Align.Generic adding iterator and more   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 1944] Align.Generic adding iterator and more   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 1944] Align.Generic adding iterator and more   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2090] Blast.NCBIStandalone BlastParser fails with blastall 2.2.14   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2351] Make Seq more like a string, even subclass string?   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2375] Coalescent support through Simcoal2   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2375] Coalescent support through Simcoal2   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2375] Coalescent support through Simcoal2   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2408] GenBank records do not contain U's   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2446] Comments in CT tags cause Bio.Sequencing.Ace.ACEParser to fail.   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2454] Iterators can't use file-like objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2454] Iterators can't use file-like objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2454] Iterators can't use file-like objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2454] Iterators can't use file-like objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2454] Iterators can't use file-like objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2454] Iterators can't use file-like objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2454] Iterators can't use file-like objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2454] Iterators can't use file-like objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2454] Iterators can't use file-like objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2454] Iterators can't use file-like objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2454] Iterators can't use file-like objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2454] Iterators can't use file-like objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2454] Iterators can't use file-like objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2454] Iterators can't use file-like objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2454] Iterators can't use file-like objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2454] Iterators can't use file-like objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2468] Tutorial needs a fix: Bio.WWW.NCBI   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2488] Adding XML parsers to Bio.Entrez   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2494] _retrieve_taxon in BioSQL.py needs urgent optimization   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2494] _retrieve_taxon in BioSQL.py needs urgent optimization   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2497] Unit tests do not cover Bio.Blast.NCBIWWW.qblast()   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2499] Bio.Blast.NCBIXML cannot handle XML without date in BlastOutput_version   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2502] PSIBlastParser fails with blastpgp 2.2.18 though works with blastpgp 2.2.15   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2502] PSIBlastParser fails with blastpgp 2.2.18 though works with blastpgp 2.2.15   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2503] An error when parsing NCBIWWW Blast output   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2503] An error when parsing NCBIWWW Blast output   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2507] Adding __getitem__ to SeqRecord for element access and slicing   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2507] Adding __getitem__ to SeqRecord for element access and slicing   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2507] Adding __getitem__ to SeqRecord for element access and slicing   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2507] Adding __getitem__ to SeqRecord for element access and slicing   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2507] Adding __getitem__ to SeqRecord for element access and slicing   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2507] Adding __getitem__ to SeqRecord for element access and slicing   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2507] Adding __getitem__ to SeqRecord for element access and slicing   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2507] Adding __getitem__ to SeqRecord for element access and slicing   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2507] Adding __getitem__ to SeqRecord for element access and slicing   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2507] New: Adding __getitem__ to SeqRecord for element access and slicing   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2508] NCBIStandalone.blastall: provide support for '-F F' and make it safe   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2508] NCBIStandalone.blastall: provide support for '-F F' and make it safe   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2508] NCBIStandalone.blastall: provide support for '-F F' and make it safe   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2508] NCBIStandalone.blastall: provide support for '-F F' and make it safe   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2508] NCBIStandalone.blastall: provide support for '-F F' and make it safe   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2508] NCBIStandalone.blastall: provide support for '-F F' and make it safe   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2508] NCBIStandalone.blastall: provide support for '-F F' and make it safe   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2508] NCBIStandalone.blastall: provide support for '-F F' and make it safe   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2508] New: NCBIStandalone.blastall: provide support for '-F F' and make it safe   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2509] Deprecating the .data property of the Seq and MutableSeq objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2509] Deprecating the .data property of the Seq and MutableSeq objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2509] New: Deprecating the .data property of the Seq and MutableSeq objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2511] New: setup.py problem with del sys.modules["Martel"]   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2511] setup.py problem with del sys.modules["Martel"]   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2511] setup.py problem with del sys.modules["Martel"]   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2511] setup.py problem with del sys.modules["Martel"]   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2511] setup.py problem with del sys.modules["Martel"]   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2516] Make it clear what is numeric and what is numpy   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2516] Make it clear what is numeric and what is numpy   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2516] Make it clear what is numeric and what is numpy   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2516] New: Make it clear what is numeric and what is numpy   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2520] New: Reading ACE assembly contig files in Bio.SeqIO   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2520] Reading ACE assembly contig files in Bio.SeqIO   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2520] Reading ACE assembly contig files in Bio.SeqIO   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2524] Handle missing libraries like TextTools in run_tests.py   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2524] New: Handle missing libraries like TextTools in run_tests.py   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2525] New: The unit tests GUI run_tests.py does not track skipped tests   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2525] The unit tests GUI run_tests.py does not track skipped tests   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2526] New: SeqFeature's .id property is not preserved in BioSQL   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2527] Bug in NCBIXML.py in _end_BlastOutput_version()   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2527] Bug in NCBIXML.py in _end_BlastOutput_version()   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2527] Bug in NCBIXML.py in _end_BlastOutput_version()   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2527] Bug in NCBIXML.py in _end_BlastOutput_version()   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2527] Bug in NCBIXML.py in _end_BlastOutput_version()   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2527] New: Bug in NCBIXML.py in _end_BlastOutput_version()   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2528] NCBIStandalone.blastall(): Replace os.popen3 with subprocess.Popen   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2528] NCBIStandalone.blastall(): Replace os.popen3 with subprocess.Popen   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2528] NCBIStandalone.blastall(): Replace os.popen3 with subprocess.Popen   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2528] NCBIStandalone.blastall(): Replace os.popen3 with subprocess.Popen   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2528] NCBIStandalone.blastall(): Replace os.popen3 with subprocess.Popen   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2528] New: NCBIStandalone.blastall(): Replace os.popen3 with subprocess.Popen   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2529] NCBI BLAST XML parser does not support the online blast version 2.2.18+   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2529] NCBI BLAST XML parser does not support the online blast version 2.2.18+   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2529] NCBI BLAST XML parser does not support the online blast version 2.2.18+   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2529] New: NCBI BLAST XML parser does not support the online blast version 2.2.18+   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2530] Bio.Seq.translate() treats invalid codons as stops   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2530] Bio.Seq.translate() treats invalid codons as stops   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2530] Bio.Seq.translate() treats invalid codons as stops   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2530] Bio.Seq.translate() treats invalid codons as stops   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2530] Bio.Seq.translate() treats invalid codons as stops   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2530] New: Bio.Seq.translate() treats invalid codons as stops   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2531] New: Nexus and fasta parsers have a problem with identical taxa names   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2531] Nexus and fasta parsers have a problem with identical taxa names   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2531] Nexus and fasta parsers have a problem with identical taxa names   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2531] Nexus and fasta parsers have a problem with identical taxa names   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2531] Nexus and fasta parsers have a problem with identical taxa names   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2531] Nexus and fasta parsers have a problem with identical taxa names   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2531] Nexus and fasta parsers have a problem with identical taxa names   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2531] Nexus and fasta parsers have a problem with identical taxa names   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2531] Nexus and fasta parsers have a problem with identical taxa names   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2531] Nexus and fasta parsers have a problem with identical taxa names   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2531] Nexus and fasta parsers have a problem with identical taxa names   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2531] Nexus and fasta parsers have a problem with identical taxa names   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2531] Nexus and fasta parsers have a problem with identical taxa names   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2531] Nexus and fasta parsers have a problem with identical taxa names   Frank Kauff
• [Biopython-dev] [Bug 2532] New: Using IUPAC alphabets in mixed case Seq objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2532] Using IUPAC alphabets in mixed case Seq objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Bio.AlignIO and Bio.Entrez documentation   Peter
• [Biopython-dev] Bio.CDD, anyone?   Michiel de Hoon
• [Biopython-dev] Bio.CDD, anyone?   Peter
• [Biopython-dev] Bio.CDD, anyone?   Michiel de Hoon
• [Biopython-dev] Bio.ECell, anybody?   Michiel de Hoon
• [Biopython-dev] Bio.Entrez & Bio.EUtil   Michiel de Hoon
• [Biopython-dev] Bio.Entrez & Bio.EUtil   Michiel de Hoon
• [Biopython-dev] Bio.GenBank.NCBIDictionary, Bio.PubMed.Dictionary   Michiel de Hoon
• [Biopython-dev] Bio.Gobase, anybody?   Michiel de Hoon
• [Biopython-dev] Bio.Rebase   Michiel de Hoon
• [Biopython-dev] Bio.SCOP   Michiel de Hoon
• [Biopython-dev] Bio.SCOP   Peter
• [Biopython-dev] Bio.SCOP maintainer?   Michiel de Hoon
• [Biopython-dev] Bio.SCOP.FileIndex   Michiel de Hoon
• [Biopython-dev] BioPax parser   Yair Benita
• [Biopython-dev] BioPax parser   Peter
• [Biopython-dev] Bug 2531 - Bio.Nexus problem with file with repeated id   Peter
• [Biopython-dev] CVS access and developers web site   Frank Kauff
• [Biopython-dev] CVS access and developers web site   Peter Cock
• [Biopython-dev] CVS freeze for release 1.46   Michiel de Hoon
• [Biopython-dev] Failing unit tests under Windows   Peter
• [Biopython-dev] Fwd: Re: sequence class proposal   Blanca Postigo Jose Miguel
• [Biopython-dev] Fwd: Re: sequence class proposal   Peter
• [Biopython-dev] Fwd: Re: sequence class proposal   Peter
• [Biopython-dev] Giving the SeqRecord a length? Evaluating it as a boolean   Michiel de Hoon
• [Biopython-dev] Giving the SeqRecord a length? Evaluating it as a boolean   Peter
• [Biopython-dev] Iterating over Ace contig files   Peter
• [Biopython-dev] Iterating over Ace contig files   Frank Kauff
• [Biopython-dev] Iterating over Ace contig files   Peter
• [Biopython-dev] Iterating over Ace contig files   Michiel de Hoon
• [Biopython-dev] Modules to be removed from Biopython   Michiel de Hoon
• [Biopython-dev] Modules to be removed from Biopython   Peter
• [Biopython-dev] Modules to be removed from Biopython   Peter
• [Biopython-dev] NCBI Abuse activity with Biopython   Michiel de Hoon
• [Biopython-dev] NCBI Abuse activity with Biopython   Andrew Dalke
• [Biopython-dev] NCBI Abuse activity with Biopython   Peter Cock
• [Biopython-dev] NCBI Abuse activity with Biopython   Andrew Dalke
• [Biopython-dev] NCBI Abuse activity with Biopython   Michiel de Hoon
• [Biopython-dev] NCBI Abuse activity with Biopython   Peter
• [Biopython-dev] NCBI Abuse activity with Biopython   Michiel de Hoon
• [Biopython-dev] NCBI Abuse activity with Biopython   Michiel de Hoon
• [Biopython-dev] NCBI Abuse activity with Biopython   Peter
• [Biopython-dev] NCBI Abuse activity with Biopython   Michiel de Hoon
• [Biopython-dev] NCBI Abuse activity with Biopython   Peter
• [Biopython-dev] NCBI Abuse activity with Biopython   Andrew Dalke
• [Biopython-dev] NCBI Abuse activity with Biopython   Peter
• [Biopython-dev] NCBI Abuse activity with Biopython   Michiel de Hoon
• [Biopython-dev] NCBI Abuse activity with Biopython   Peter
• [Biopython-dev] NCBI Abuse activity with Biopython   Michiel de Hoon
• [Biopython-dev] NCBI Abuse activity with Biopython   Peter
• [Biopython-dev] New release   Michiel de Hoon
• [Biopython-dev] New release   Peter
• [Biopython-dev] New release   Peter
• [Biopython-dev] New release   Michiel de Hoon
• [Biopython-dev] New release   Michiel de Hoon
• [Biopython-dev] New release   Peter Cock
• [Biopython-dev] New release 1.46   Michiel de Hoon
• [Biopython-dev] New release 1.46   Peter
• [Biopython-dev] Recent Bio.Nexus updates   Peter
• [Biopython-dev] Recent Bio.Nexus updates   Frank Kauff
• [Biopython-dev] Recent Bio.Nexus updates   Peter
• [Biopython-dev] Removing obsolete bits of the Tutorial   Peter
• [Biopython-dev] Removing obsolete bits of the Tutorial   Michiel de Hoon
• [Biopython-dev] Removing obsolete bits of the Tutorial   Peter
• [Biopython-dev] Removing obsolete bits of the Tutorial   Michiel de Hoon
• [Biopython-dev] SeqRecord to file format as string   Peter
• [Biopython-dev] SeqRecord to file format as string   Jared Flatow
• [Biopython-dev] SeqRecord to file format as string   Jared Flatow
• [Biopython-dev] SeqRecord to file format as string   Peter
• [Biopython-dev] SeqRecord to file format as string   Jared Flatow
• [Biopython-dev] sequence class proposal   Peter
• [Biopython-dev] test_Entrez.py fails on Linux?   Peter
• [Biopython-dev] test_Entrez.py fails on Linux?   Peter
• [Biopython-dev] test_Entrez.py fails on Linux?   Michiel de Hoon
• [Biopython-dev] test_Entrez.py fails on Linux?   Peter
• [Biopython-dev] test_Entrez.py fails on Linux?   Peter

Last message date: Mon Jun 30 18:51:17 EDT 2008
Archived on: Mon Jun 30 18:51:20 EDT 2008

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