[Biopython-dev] Alignment problem. bug?

[Sebastian Bassi]

On Tue, Jul 8, 2008 at 8:02 AM, Peter <biopython at maubp.freeserve.co.uk> wrote:
> I've reproduced this using Clustalw 2.0.8 (online at the EBI) and with
>  Clustalw 2.0.9 (installed locally).  It was a problem parsing Clustal
> files where the first line of the consensus was blank (and would
> probably affect both Clustal W 1.83 too).

Yes, I used ClustalW 1.83

> I think I have fixed this with Bio/AlignIO/ClustalIO.py revision: 1.12
> Could you update this file and re-test please Sebastian?  Also, may I
> add a test alignment file based on your example to CVS please?

Ok, I will test it today. You can use my file or any possible derivation of it.

Best,
SB.


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