[Biopython-dev] [Bug 2535] New: Support for PIR / NBRF format in Bio.SeqIO

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2535

           Summary: Support for PIR / NBRF format in Bio.SeqIO
           Product: Biopython
           Version: Not Applicable
          Platform: PC
        OS/Version: All
            Status: NEW
          Severity: enhancement
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: biopython-bugzilla at maubp.freeserve.co.uk


BioPerl and EMBOSS both refer to this as the "pir" format, although EMBOSS also
supports "nbrf" as an alternative.

http://bioperl.org/wiki/PIR_sequence_format

Patch to follow, a new parser and writer in plain python.  The existing Martel
based parser in Bio.NBRF could then be deprecated.


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