[Biopython-dev] [Bug 2533] Support for simple "tab" format in Bio.SeqIO

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Tue Jul 1 16:00:59 UTC 2008


http://bugzilla.open-bio.org/show_bug.cgi?id=2533





------- Comment #2 from biopython-bugzilla at maubp.freeserve.co.uk  2008-07-01 12:00 EST -------
Created an attachment (id=963)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=963&action=view)
Patch to add the "tab" format to Bio.SeqIO and update the unit test output

The plumbing to make Bio.SeqIO (and Bio.AlignIO) aware of the new format.

Adds the reader/writer mapping to Bio/SeqIO/__init__.py (trivial) and gives the
updated output from test_SeqIO.py (trivial to regenerate with "python
run_tests.py -g test_SeqIO.py").


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