[Biopython-dev] [Bug 2532] Using IUPAC alphabets in mixed case Seq objects

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2532





------- Comment #2 from fkauff at biologie.uni-kl.de  2008-07-01 09:16 EST -------
I opt for (b): an easy one-time addition to Bio.Alphabets, easy to use for
everyone (instead creating their own uppercase-lowercase variants of those
terribly complicated biopython alphabet classes), and easy to change for all
other modules if lowercase-uppercase is what they want (or need).
Nexus.py and Phd.py certainly need to allow lowercase characters, as this is
very common.

Frank 


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