[Biopython-dev] [Bug 1968] GenBank parsing fails if REFERNCE (bases.. )line is split

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=1968


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|ASSIGNED                    |RESOLVED
         Resolution|                            |FIXED




------- Comment #4 from biopython-bugzilla at maubp.freeserve.co.uk  2006-03-09 10:22 -------
I have checked in my own fix (I didn't want to depend on bracket/parentheses
counting) and tested J01917.1 GI:209811 and worse versions where I edited the
file to split the reference onto many lines.

See Bio/GenBank/__init__.py revision 1.59

http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/biopython/Bio/GenBank/__init__.py?cvsroot=biopython

If you wouldn't mind Kael, it would be great if you could try this version on
all viral sequences in genbank release 152.

Thanks.  Peter




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