[Biopython-dev] [Bug 1933] New: Iterator support for Standalone XML blast output with multiple querys

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=1933

           Summary: Iterator support for Standalone XML blast output with
                    multiple querys
           Product: Biopython
           Version: Not Applicable
          Platform: All
        OS/Version: All
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: biopython-bugzilla at maubp.freeserve.co.uk


Reported on the mailing lists by David Weisman:

http://www.biopython.org/pipermail/biopython/2006-January/002881.html

> I tried using NCBIXML parsing on a local blast run,
> in which the input had multiple query sequences.
> Blastall writes multiple xml documents to the output file,
> and the SAX parser threw a SAXParseException on the second
> <?xml...> declaration, complaining of junk after the
> document element.

i.e. The output is a series of valid XML documents concatenated together.




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