[Biopython-dev] [Bug 1950] New: addition of element, SSBOND, OBSLTE, CAVEAT fields

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=1950

           Summary: addition of element, SSBOND, OBSLTE, CAVEAT fields
           Product: Biopython
           Version: Not Applicable
          Platform: All
        OS/Version: All
            Status: NEW
          Severity: enhancement
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: edmonds at fas.harvard.edu


I find it useful to be able to sort atoms according to their element (H, C, N,
O, etc), which is contained in columns 77-78 of the PDB, so I have added it to
the parsing of the PDB, and have added get_element to Atom.  

I did not add it to the MMCIFParser because I don't know anything about MMCIFs
and don't know if it's even applicable for MMCIFs.  

I also added trivial SSBOND, OBSLTE, and CAVEAT parsing to the PDB header
parser.




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