[Biopython-dev] [Bug 2051] XML Blast parser unusable with multiple queries and recent (2.2.13) blast - patch attached

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Tue Dec 12 12:40:04 UTC 2006


http://bugzilla.open-bio.org/show_bug.cgi?id=2051





------- Comment #8 from biopython-bugzilla at maubp.freeserve.co.uk  2006-12-12 07:40 -------
I see, regarding comment 7, that was revision 1.64 to
Bio/Blast/NCBIStandalone.py and added support for the command line option
"oldengine"

http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/biopython/Bio/Blast/NCBIStandalone.py.diff?r1=1.63&r2=1.64&cvsroot=biopython

Jacob Joseph's patch on comment 1 also included changes to Bio/Blast/Record.py
and Bio/Blast/NCBIXML.py - some of his suggestions also appear in bug 1970
comment 2


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