[Biopython-dev] Reading sequences: FormatIO, SeqIO, etc

Marc Colosimo mcolosimo at mitre.org
Thu Aug 17 12:08:24 UTC 2006


Nice quick work on that. For Clustal, I think it should NOT be an  
Iterator, but there should be SequenceDict or SequenceList for it.  
There are other alignment filetypes out there that could use a  
SequenceIterator (those that are not interlaced).  From looking over  
your code, it seem like it would be easy to add a check in  
File2SequenceDict/List to check for Clustal types and do something  


On Aug 12, 2006, at 4:25 AM, Peter wrote:

> I've having a few issues with my email setup which is why I haven't
> replied recently.
> A week ago I filed bug 2059 for this discussion, and attached some  
> code:
> http://bugzilla.open-bio.org/show_bug.cgi?id=2059
> I'm interested in your feedback - from the framework down to if you
> don't like the class names for example.
> Peter

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