[Biopython-dev] [Bug 1761] New: BLAST not returning final results

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=1761

           Summary: BLAST not returning final results
           Product: Biopython
           Version: Not Applicable
          Platform: PC
        OS/Version: Windows XP
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Other
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: genesniffer at hotmail.com


Hi,
I'm just trying to run BLAST at NCBI using NCBIWWW using the script below.  
The request seems to be sent fine, but the returned page ends with "This page 
will automatically be updated...."  ie the final results are not being 
returned.  The module doesn't not seem to be polling for the final result.  Is 
this a bug in the program or am I doing something wrong?  I look forward to 
hearing from you...
Kate

from Bio.Blast import NCBIWWW
blast_results = NCBIWWW.blast('blastp', 'nr', protein_seq, entrez_query="Homo 
sapiens [ORGN]")
blast_results = blast_results.readlines()
print blast_results



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