[Biopython-dev] bug in FormatRegistry.py

[Jeffrey Chang]

Good catch!  I've committed the fix in the CVS.

Jeff


On Oct 4, 2004, at 6:29 PM, Coleman, Michael wrote:

> Hi,
>
> I ran into a bug in FormatRegistry.py just now.  In this function, the
> reference to 'parent' is bogus.  I suspect it should be 'child'.
>
>     def _build_child_path(self, format, visited=None):
>         if visited is None:
>             visited = {}
>         if visited.has_key(format.name):
>             return []
>         format_list = [format]
>         for child in getattr(format, 'objs', []):
>             format_list.extend(self._build_child_path(parent, visited))
>         return format_list
>
> I ran into this while following this recipe
>
> 	http://www.biopython.org/docs/cookbook/genbank_to_fasta.html
>
> Regards,
> Mike
>
> Mike Coleman, Scientific Programmer, +1 816 926 4419
> Stowers Institute for Biomedical Research
> 1000 E. 50th St., Kansas City, MO  64110
>
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