[Biopython-dev] MetaTool

[Cayte]

----- Original Message -----
From: "Tarjei Mikkelsen" <tarjei at genome.wi.mit.edu>
To: "'Cayte'" <katel at worldpath.net>; <biopython-dev at biopython.org>
Sent: Saturday, September 08, 2001 9:49 PM
Subject: RE: [Biopython-dev] MetaTool


> >I'm holding off on more pathway stuff till I find out what Tarjei has
>
>  I've completed a prototype for the core species/reaction/system classes
> as described earlier.
>
>  Next, I intend to use these classes to implement the missing part from
> my KEGG parser - the reaction database. Then I'd like to write a bridge
> from the pathway classes to Metatool. Combined with your output parser
> this would give us a complete "vertical slice" from database (KEGG/WIT)
> through the pathway classes to an analysis program.
>
   I may need to retrofit some MetaTool classes to fit your classes.  Please
share your ideas
 on what's needed for the MetaTool end of the bridge.
>  I'll do a first commit as soon as I am satisfied that the pathway
> classes are well designed. Time is getting precious these days as school
> is starting again, so it might take a while for this to happen.
>
  Commiting code early may allow users to offer suggestions on class
structure.
>
> _______________________________________________
                              Cayte