[Biopython-dev] next release closer (?)
jchang at SMI.Stanford.EDU
Mon Nov 20 23:50:54 EST 2000
> > - br_regrtest saves the name of the regression test in the first line of
> > the output file. For example, the first line of output/test_seq is
> > "test_seq". This seems to be missing with test_prodoc.
> Its also missing from test_seq and test_Fasta when I run them
> standalone. Is the test name inserted manually into the baseline files? If
> so, I'll also have to add it to test_rebase.
br_regrtest should do it automatically. From the biopython/Tests
python br_regrtest -v test_Fasta
and the first line will be 'test_seq'.
To generate the file in the output directory, do:
python br_regrtest -g test_Fasta
This will create a file in output/test_Fasta, whose first line will be
'test_Fasta'. This will need to be verified by hand in order for the
regression tests to be accurate.
Sorry about the confusion.
> I get an error from test_prosite. My OS is Win98.
> test test_prosite crashed -- exceptions.TypeError : an integer is required
I don't know. Andrew?
One thing you can try, is to run:
and see the full stack dump that's generated.
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