From jefftc at stanford.edu Sun Jul 27 20:45:06 2003 From: jefftc at stanford.edu (Jeffrey Chang) Date: Sun Jul 27 20:48:20 2003 Subject: [Biopython-announce] Biopython 1.20 released Message-ID: Hello Everybody, After months of work, Biopython 1.20 has been released! This release includes substantial new features including: - Andrew Dalke EUtils library for accessing databases at NCBI - Michiel de Hoon's gene expression analysis package - Thomas Hamelryck's PDB package. It also contains a bunch of the usual bug fixes and incremental updates. All users are encouraged to upgrade to this version. The change notes are appended to the end of this file. The sources are now available at: http://www.biopython.org/download/ As usual, please report any bugs, problems, or comments to biopython-dev@biopython.org . Many thanks to the people who have contributed to this release! Jeff The Biopython Consortium added Andrew Dalke's EUtils library added Michiel de Hoon's gene expression analysis package updates to setup code, now smarter about dependencies updates to test suite, now smarter about code that is imported Michael Hoffman's fixes to DocSQL syntax fixes in triemodule.c to compile on SGI, Python 2.1 compatible updates in NCBIStandalone, short query error Sebastian Bassi submitted code to calculate LCC complexity Greg Kettler's NCBIStandalone fix for long query lengths slew of miscellaneous fixes from George Paci miscellaneous cleanups and updates from Andreas Kuntzagk Peter Bienstman's fixes to Genbank code -- now parses whole database Kayte Lindner's LocusLink package miscellaneous speedups and code cleanup in ParserSupport by Brad Chapman miscellaneous BLAST fixes and updates Iddo added new code to parse BLAST table output format Karl Diedrich's patch to read T_Coffee files Larry Heisler's fix for primer3 output Bio.Medline now uses proper iterator objects copen now handles SIGTERM correctly small bugfixes and updates in Thomas Hamelryck's PDB package bugfixes and updates to SeqIO.FASTA reader updates to Registry system, conforms to 2003 hackathon OBDA spec Yu Huang patch to support tblastn in wublast expression