[Bioperl-pipeline] iohandlers
Tania Oh
tania.oh at human-anatomy.oxford.ac.uk
Mon Jan 26 14:17:29 EST 2004
Hi all,
the last email I sent to the list was about a bug I had that inputs
were not being sent into genewise.
after a long bug hunt, I've come to realise that the iohandler no 5 is
never called! ie. the Bio::DB::Fasta::get_seq_by_id function is never
called..
is my xml declaration wrong?
when the genewise runnable is called, the only datahandlers used are no
4 which is to get_all_ProteinAlignFeatures. so iohandler no 5 is not
called.
how do I get around this?
any ideas would be much appreciated!
thanks in advance,
tania
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