[Bioperl-pipeline] help needed : Genewise in pipeline not getting
input
Tania Oh
tania.oh at human-anatomy.oxford.ac.uk
Fri Jan 16 18:07:02 EST 2004
Hi all,
am having some problems with getting biopipe to run genewise.
I get the error from genewise that there is no protein sequence entered
and target dna.
Setup_genewise.pm seems to run okay with the input table getting filled
up with the relevant datat.
but where is it in biopipe that the data from the input table is
retrieved to be sent to genewise? the object that is sent to the
genewise runnable doesn't contain the query_pep or the target_dna
required by genewise.
attached is my xml stylesheet. Pls have a look and tell me if I
missed out something?
thanks in advance,
tania
-------------- next part --------------
A non-text attachment was scrubbed...
Name: genebuild.xml
Type: application/octet-stream
Size: 10803 bytes
Desc: not available
Url : http://portal.open-bio.org/pipermail/bioperl-pipeline/attachments/20040116/ab886c40/genebuild-0001.obj
More information about the bioperl-pipeline
mailing list