[Bioperl-pipeline] Missing module in 0.1 tarball
Alistair Rust
arust at systemsbiology.org
Tue May 6 12:39:19 EDT 2003
Hi guys,
I've just downloaded the 0.1 tarball to have a bit of a play with it.
So far the installation seems to have gone as described in the docs.
One thing that flagged up though was that to use XML-SAX-0.12, the make
file for this told me it also required XML-NamespaceSupport-1.08. That
maybe a local thing to my installation but I thought I would flag
dependancy anyway.
I'm now at the point of trying to populate a db using the Xml2DB.pl
script. This doesn't work out of the box as it's complaining about a
Converter module. In Xml2DB.pl:
- Line 28: use Bio::Pipeline::Utils::Converter
- Line 325: my $converter_obj = new Bio::Pipeline::Converter(
- Line 373: my $converter_obj = Bio::Pipeline::Utils::Converter->new
The error message on running the script is the old can't locate in INC
blah, blah. If I comment out line 28 (and add an exit soon after) it's
fine.
There are two issues with this:
- there is some inconsistency as to where the module actually is.
- and I can't find the module in either of these locations above.
Best
Alistair
--
Alistair G. Rust
Senior Research Scientist
Institute for Systems Biology
1441 North 34th St. arust AT systemsbiology.org
Seattle, WA 98103 8904 http://www.systemsbiology.org
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