[Bioperl-pipeline] Re: BioPipe

Elia Stupka elia at tll.org.sg
Tue Jul 1 14:42:20 EDT 2003


> If the thread problem cannot be solved in perl, you cannot make 
> pipeline manager server program access multiple connection as well.

But you can still use 'fork' and mutliple processes, right? We used to 
use it 4 years ago without a problem in Ensembl....

> My suggest is to let pipeline managers running as process and each has 
> one database.

I doubt it will work sensibly in the long term, I think it makes no 
sense to populate the servers with tons of MySQL databases to store 
multiple pipelines. And as I mentioned, I think we ought to have 
pipeline ids on the jobs, files, tables,etc.

Elia

---
Bioinformatics Program Manager
Temasek Life Sciences Laboratory
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Singapore 117604
Tel. +65 6874 4945
Fax. +65 6872 7007



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