[Bioperl-pipeline] Hmmpfam Output
Jer-Ming
giscjm at nus.edu.sg
Wed Jan 29 16:00:58 EST 2003
Actually the code in question belongs to Bio::Tools, hmmpfam.
I noticed that the Hmmpfam parser in Bio::Tools is creating FeaturePairs
with the the additional tag
$featurepair->add_tag_value("hid",$feat->{primary});
The primary feature in the $featurepair already has the hid set in
$feature->primary .. I believe.
This is perfectly fine, except that when the features are stored into
BioSQL, I noticed that the hid field gets stored twice. One as a
seqfeature_qualifier_value, and one as an ontology_term. I don't think this
duplicate data is neccessary....
Is it alright to remove the hid tag?
Jerm
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