[Bioperl-pipeline] decent genbank parser
Andy Nunberg
anunberg@oriongenomics.com
Mon, 23 Sep 2002 16:03:04 -0500
Hi,
I know there has been a big debate on bioperl list about genbank parsers. I
admit I wasnt following it very closely.
I'd rather as you first ,
Is there a parser that retains the organization of the features ? That is,
keeps track of the exons for a given gene, utr's etc...?
I tried parsing a BAC genbank file with bioperl, but it flattens everything
out (using Bio::SeqIO).
Thanks
Andy
*******************************************************************
Andy Nunberg, Ph.D
Computational Biologist
Orion Genomics, LLC
(314) 615-6989
http://www.oriongenomics.com