[Bioperl-pipeline] Requirements for pipeline installation
shawnh@worf.fugu-sg.org
shawnh@worf.fugu-sg.org
Fri, 23 Aug 2002 23:43:10 +0800 (SGT)
Yeah the only ones that fail for me are Emboss and Clustalw which
are not maintained by us. I'm sure by the next release about in a month,those
will be fixed.
shawn
On Fri, 23 Aug 2002, Elia Stupka wrote:
> > I ran make test and got several errors.
>
> Hmm.... there are two issues. One is that bioperl-run is actually not very
> polished right now because we were not the maintainers of it, we should
> look into this, I seem to get a few errors too.
>
> But the other issue is that you don't seem to have in the path some normal
> things like some of the tools. Best thing is if you checkout the main
> trunk of bioperl, rather than a stable branch, see if you have the same
> problem. Also please check that both bioperl-run, bioperl-live and
> bioperl-pipeline are in your PERL5LIB
>
> The other common error is that of not finding binaries, but that is ok, as
> long as you are not interested in those binaries.
>
> On Monday I will triple-check that all tests pass on bioperl-run and get
> back to you (now it's Friday night, off for some rest)
>
> Elia
>
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--
'Torture the data long enough and they will reveal anything'
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