TBLASTN 2.0MP-WashU [04-May-2006] [linux26-x64-I32LPF64 2006-05-10T17:22:28] Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA. All Rights Reserved. Reference: Gish, W. (1996-2006) http://blast.wustl.edu Query= Os03g17980.2 |CAMK_KIN1/SNF1/Nim1_like_AMPKh.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed|Oryza sativa|NT|509 (509 letters) Database: Chromosome6.nuc 1 sequences; 28,001 total letters. Searching done Smallest Sum Reading High Probability Sequences producing High-scoring Segment Pairs: Frame Score P(N) N Chr6:159690000-159718000 |Zea mays genomic DNA, chromosom... +1 331 4.9e-137 9 >Chr6:159690000-159718000 |Zea mays genomic DNA, chromosome 6, version 1|Zea mays|NT|169254300 Length = 28,001 Score = 331 (121.6 bits), Expect = 4.9e-137, Sum P(9) = 4.9e-137 Identities = 61/72 (84%), Positives = 65/72 (90%), Frame = +1 Query: 120 IFQQIISGVEYCHRNMVVHRDLKPENLLLDSKYNVKLADFGLSNVMHDGHFLKTSCGSPN 179 +F QIISGVEYCHRNMV HRDLKPENLLLDSK NVK+ADFGLSN+M DGHFLKTSCGSPN Sbjct: 23971 LFMQIISGVEYCHRNMVAHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPN 24150 Query: 180 YAAPEVISGKLY 191 YAAPEV S +Y Sbjct: 24151 YAAPEVSSSIIY 24186 Score = 294 (108.6 bits), Expect = 4.9e-137, Sum P(9) = 4.9e-137 Identities = 56/63 (88%), Positives = 58/63 (92%), Frame = +2 Query: 229 GGIYTLPSHLSALARDLIPRMLVVDPMKRITIREIREHQWFQIRLPRYLAVPPPDTAQQA 288 GGIYTLPSHLS ARDLIPRMLVVDPMKRITIREIREH WF+IRLPRYLAVPPPDTAQQ Sbjct: 24482 GGIYTLPSHLSPSARDLIPRMLVVDPMKRITIREIREHVWFKIRLPRYLAVPPPDTAQQV 24661 Query: 289 KMI 291 K + Sbjct: 24662 KKV 24670 Score = 261 (96.9 bits), Expect = 1.8e-127, Sum P(9) = 1.8e-127 Identities = 59/96 (61%), Positives = 68/96 (70%), Frame = +3 Query: 63 KREIKILRLFIHPHIIRLYEVIYTPTDIYVVMEYCKFGELFDYIVEKGRLQEDEARRIFQ 122 KREIKILRLF+HPHIIRLYEVI TP DI VVMEY K GELFDYIVEKGRL E+EAR FQ Sbjct: 23574 KREIKILRLFMHPHIIRLYEVIDTPADICVVMEYVKSGELFDYIVEKGRLHEEEARHFFQ 23753 Query: 123 QIISGVEYCHRNMVVHRDLKPENLLLDSKYNVKLAD 158 Q V + H M + + + ++L SK N + D Sbjct: 23754 Q----VAFLHITMFIPK-IAQCIVILGSK-NCSMVD 23843 Score = 237 (88.5 bits), Expect = 4.9e-137, Sum P(9) = 4.9e-137 Identities = 44/44 (100%), Positives = 44/44 (100%), Frame = +2 Query: 185 VISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIK 228 VISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIK Sbjct: 24257 VISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIK 24388 Score = 196 (74.1 bits), Expect = 4.9e-137, Sum P(9) = 4.9e-137 Identities = 38/57 (66%), Positives = 48/57 (84%), Frame = +3 Query: 6 KGGGH-SEALKNYNLGRTLGIGSFGKVKIAEHKLTGHRVAIKILNRRQMRNMEMEEK 61 +G G + L Y +G+TLGIGSFGKVKIAEH LTGH+VAIKILNR+++R+M+MEEK Sbjct: 23238 EGAGRDANPLSGYRIGKTLGIGSFGKVKIAEHILTGHKVAIKILNRKKIRSMDMEEK 23408 Score = 192 (72.6 bits), Expect = 4.9e-137, Sum P(9) = 4.9e-137 Identities = 41/78 (52%), Positives = 53/78 (67%), Frame = +1 Query: 395 QSRAQPREIMIEVLKALQDLNVSWKKNGQYNMKCRWSVGTQATDMLDVNNSFVDDSIIMD 454 QSRA PREI+ EVLKALQ+LNV WKK G YNMKCRWS G + M+ ++SF +S I++ Sbjct: 25390 QSRAHPREIISEVLKALQELNVYWKKIGHYNMKCRWSPGCLES-MMHNSDSFSAESAIIE 25566 Query: 455 NGDVNGRLPAVIKFEIQL 472 + +KFEIQ+ Sbjct: 25567 TDVFMEKSTPTVKFEIQV 25620 Score = 159 (61.0 bits), Expect = 4.9e-137, Sum P(9) = 4.9e-137 Identities = 33/46 (71%), Positives = 39/46 (84%), Frame = +2 Query: 465 VIKFE-IQLYKTRDEKYLLDMQRVTGPQLLFLDFCADFLTKLRVL* 509 +I F +QLYKTRDEKYLLD+QRV+G LLFLD C+ FLT+LRVL* Sbjct: 26306 LIHFHWLQLYKTRDEKYLLDLQRVSGSHLLFLDLCSAFLTQLRVL* 26443 Score = 121 (47.7 bits), Expect = 4.9e-137, Sum P(9) = 4.9e-137 Identities = 22/29 (75%), Positives = 27/29 (93%), Frame = +3 Query: 320 EATVAYYLLLDNRFRATSGYLGADYQESL 348 +ATVAYYLLLDNR R TSGYLG+++QES+ Sbjct: 24972 QATVAYYLLLDNRLRTTSGYLGSEFQESM 25058 Score = 100 (40.3 bits), Expect = 4.9e-137, Sum P(9) = 4.9e-137 Identities = 17/32 (53%), Positives = 26/32 (81%), Frame = +1 Query: 291 IDEDTLQDVVNLGYGKDHVCESLRNRLQNEAT 322 +DE+TL DV+ +G+ K+ + ESL+NRLQNE + Sbjct: 24820 VDEETLNDVIKMGFDKNQLIESLQNRLQNEVS 24915 Score = 89 (36.4 bits), Expect = 4.9e-137, Sum P(9) = 4.9e-137 Identities = 19/38 (50%), Positives = 24/38 (63%), Frame = +1 Query: 358 SESASSNTRHYLPGSSDPHASGLRPHYPVERKWALGLQ 395 +E+ +S T G S+ SGLR H+ ERKWALGLQ Sbjct: 25195 AETPTSATELRQHGFSESPGSGLRQHFAAERKWALGLQ 25308 Score = 45 (20.9 bits), Expect = 9.4e-25, Sum P(3) = 9.4e-25 Identities = 8/24 (33%), Positives = 14/24 (58%), Frame = +3 Query: 350 RNFNRFASSESASSNTRHYLPGSS 373 + RF + E + ++HYL GS+ Sbjct: 20796 KGLTRFRAVEMYQTQSKHYLHGSN 20867 Score = 44 (20.5 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10 Identities = 22/86 (25%), Positives = 37/86 (43%), Frame = +1 Query: 332 RFRATSGYLGADYQESLERNFNRFASSESASSNTRHYLPGSSDPHASGLRPHYPVERKWA 391 R R SG GAD +R+ +R + R LP + A RP + V R A Sbjct: 7666 RTRGPSGPQGADRPAVRQRSPSRAPGRGPSGPRPRTVLPCAESTTAPRTRP-WTV-RPRA 7839 Query: 392 LGLQSRAQ-PREIMIEVLKALQDLNV 416 ++ A+ +++E L + +N+ Sbjct: 7840 RTVRPCAEGTATVLVECLTLQKGVNI 7917 Score = 331 (121.6 bits), Expect = 4.9e-137, Sum P(9) = 4.9e-137 Identities = 61/72 (84%), Positives = 65/72 (90%), Frame = -1 Query: 120 IFQQIISGVEYCHRNMVVHRDLKPENLLLDSKYNVKLADFGLSNVMHDGHFLKTSCGSPN 179 +F QIISGVEYCHRNMV HRDLKPENLLLDSK NVK+ADFGLSN+M DGHFLKTSCGSPN Sbjct: 2567 LFMQIISGVEYCHRNMVAHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPN 2388 Query: 180 YAAPEVISGKLY 191 YAAPEV S +Y Sbjct: 2387 YAAPEVSSSIIY 2352 Score = 294 (108.6 bits), Expect = 4.9e-137, Sum P(9) = 4.9e-137 Identities = 56/63 (88%), Positives = 58/63 (92%), Frame = -2 Query: 229 GGIYTLPSHLSALARDLIPRMLVVDPMKRITIREIREHQWFQIRLPRYLAVPPPDTAQQA 288 GGIYTLPSHLS ARDLIPRMLVVDPMKRITIREIREH WF+IRLPRYLAVPPPDTAQQ Sbjct: 2056 GGIYTLPSHLSPSARDLIPRMLVVDPMKRITIREIREHVWFKIRLPRYLAVPPPDTAQQV 1877 Query: 289 KMI 291 K + Sbjct: 1876 KKV 1868 Score = 261 (96.9 bits), Expect = 1.8e-127, Sum P(9) = 1.8e-127 Identities = 59/96 (61%), Positives = 68/96 (70%), Frame = -3 Query: 63 KREIKILRLFIHPHIIRLYEVIYTPTDIYVVMEYCKFGELFDYIVEKGRLQEDEARRIFQ 122 KREIKILRLF+HPHIIRLYEVI TP DI VVMEY K GELFDYIVEKGRL E+EAR FQ Sbjct: 2964 KREIKILRLFMHPHIIRLYEVIDTPADICVVMEYVKSGELFDYIVEKGRLHEEEARHFFQ 2785 Query: 123 QIISGVEYCHRNMVVHRDLKPENLLLDSKYNVKLAD 158 Q V + H M + + + ++L SK N + D Sbjct: 2784 Q----VAFLHITMFIPK-IAQCIVILGSK-NCSMVD 2695 Score = 237 (88.5 bits), Expect = 4.9e-137, Sum P(9) = 4.9e-137 Identities = 44/44 (100%), Positives = 44/44 (100%), Frame = -2 Query: 185 VISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIK 228 VISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIK Sbjct: 2281 VISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIK 2150 Score = 196 (74.1 bits), Expect = 4.9e-137, Sum P(9) = 4.9e-137 Identities = 38/57 (66%), Positives = 48/57 (84%), Frame = -3 Query: 6 KGGGH-SEALKNYNLGRTLGIGSFGKVKIAEHKLTGHRVAIKILNRRQMRNMEMEEK 61 +G G + L Y +G+TLGIGSFGKVKIAEH LTGH+VAIKILNR+++R+M+MEEK Sbjct: 3300 EGAGRDANPLSGYRIGKTLGIGSFGKVKIAEHILTGHKVAIKILNRKKIRSMDMEEK 3130 Score = 192 (72.6 bits), Expect = 4.9e-137, Sum P(9) = 4.9e-137 Identities = 41/78 (52%), Positives = 53/78 (67%), Frame = -1 Query: 395 QSRAQPREIMIEVLKALQDLNVSWKKNGQYNMKCRWSVGTQATDMLDVNNSFVDDSIIMD 454 QSRA PREI+ EVLKALQ+LNV WKK G YNMKCRWS G + M+ ++SF +S I++ Sbjct: 1148 QSRAHPREIISEVLKALQELNVYWKKIGHYNMKCRWSPGCLES-MMHNSDSFSAESAIIE 972 Query: 455 NGDVNGRLPAVIKFEIQL 472 + +KFEIQ+ Sbjct: 971 TDVFMEKSTPTVKFEIQV 918 Score = 159 (61.0 bits), Expect = 4.9e-137, Sum P(9) = 4.9e-137 Identities = 33/46 (71%), Positives = 39/46 (84%), Frame = -2 Query: 465 VIKFE-IQLYKTRDEKYLLDMQRVTGPQLLFLDFCADFLTKLRVL* 509 +I F +QLYKTRDEKYLLD+QRV+G LLFLD C+ FLT+LRVL* Sbjct: 232 LIHFHWLQLYKTRDEKYLLDLQRVSGSHLLFLDLCSAFLTQLRVL* 95 Score = 121 (47.7 bits), Expect = 4.9e-137, Sum P(9) = 4.9e-137 Identities = 22/29 (75%), Positives = 27/29 (93%), Frame = -3 Query: 320 EATVAYYLLLDNRFRATSGYLGADYQESL 348 +ATVAYYLLLDNR R TSGYLG+++QES+ Sbjct: 1566 QATVAYYLLLDNRLRTTSGYLGSEFQESM 1480 Score = 100 (40.3 bits), Expect = 4.9e-137, Sum P(9) = 4.9e-137 Identities = 17/32 (53%), Positives = 26/32 (81%), Frame = -1 Query: 291 IDEDTLQDVVNLGYGKDHVCESLRNRLQNEAT 322 +DE+TL DV+ +G+ K+ + ESL+NRLQNE + Sbjct: 1718 VDEETLNDVIKMGFDKNQLIESLQNRLQNEVS 1623 Score = 89 (36.4 bits), Expect = 4.9e-137, Sum P(9) = 4.9e-137 Identities = 19/38 (50%), Positives = 24/38 (63%), Frame = -1 Query: 358 SESASSNTRHYLPGSSDPHASGLRPHYPVERKWALGLQ 395 +E+ +S T G S+ SGLR H+ ERKWALGLQ Sbjct: 1343 AETPTSATELRQHGFSESPGSGLRQHFAAERKWALGLQ 1230 Score = 45 (20.9 bits), Expect = 5.0e-24, Sum P(4) = 5.0e-24 Identities = 8/24 (33%), Positives = 14/24 (58%), Frame = -3 Query: 350 RNFNRFASSESASSNTRHYLPGSS 373 + RF + E + ++HYL GS+ Sbjct: 5742 KGLTRFRAVEMYQTQSKHYLHGSN 5671 Score = 43 (20.2 bits), Expect = 2.4e-41, Sum P(6) = 2.4e-41 Identities = 15/59 (25%), Positives = 26/59 (44%), Frame = -1 Query: 209 LCGTLPFDDENIPNLF--KKIKGGIYTLPSHLSALARDLIPRMLVVDPMKRITIREIRE 265 LC P D + L ++ GIY L HL+ + ++ V + +K+ R + E Sbjct: 17855 LCD--PNDKNRVKCLLCGQESTAGIYRLKQHLAHVGTSIVKCPKVTEEVKQKCKRNLDE 17685 Score = 43 (20.2 bits), Expect = 7.9e-24, Sum P(4) = 7.9e-24 Identities = 14/53 (26%), Positives = 26/53 (49%), Frame = -3 Query: 343 DYQESLERNFNRFASSESASSN----------TRHYLPGSSDPHASGLRPHYP 385 D Q +L+++ N+ ++ SS T + PG+S P+ S R ++P Sbjct: 6975 DNQLTLKKSLNQTTTARKPSSGHG*RTQVGMATGNSPPGNSSPYVSPRRKNFP 6817 Parameters: ctxfactor=6.00 E=10 Query ----- As Used ----- ----- Computed ---- Frame MatID Matrix name Lambda K H Lambda K H +0 0 BLOSUM62 0.323 0.140 0.421 same same same Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a Query Frame MatID Length Eff.Length E S W T X E2 S2 +0 0 509 509 8.9 42 3 13 22 0.13 37 35 0.13 42 Statistics: Database: DB/Chromosome6.nuc Title: Chromosome6.nuc Posted: 10:46:41 AM CEST Apr 19, 2010 Created: 10:46:41 AM CEST Apr 19, 2010 Format: XDF-1 # of letters in database: 28,001 # of sequences in database: 1 # of database sequences satisfying E: 1 No. of states in DFA: 573 (121 KB) Total size of DFA: 287 KB (2119 KB) Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00 No. of threads or processors used: 1 Search cpu time: 0.00u 0.01s 0.01t Elapsed: 00:00:00 Total cpu time: 0.00u 0.01s 0.01t Elapsed: 00:00:00 Start: Fri Apr 23 12:18:37 2010 End: Fri Apr 23 12:18:37 2010