BLASTX 2.0MP-WashU [04-May-2006] [linux26-x64-I32LPF64 2006-05-10T17:22:28] Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA. All Rights Reserved. Reference: Gish, W. (1996-2006) http://blast.wustl.edu Gish, Warren and David J. States (1993). Identification of protein coding regions by database similarity search. Nat. Genet. 3:266-72. Query= Chr6:159690000-159718000 |Zea mays genomic DNA, chromosome 6, version 1|Zea mays|NT|169254300 (28,001 letters) Translating both strands of query sequence in all 6 reading frames Database: Rice.prot 1 sequences; 509 total letters. Searching done Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N Os03g17980.2 |CAMK_KIN1/SNF1/Nim1_like_AMPKh.2 - CAMK inc... 331 4.6e-137 9 >Os03g17980.2 |CAMK_KIN1/SNF1/Nim1_like_AMPKh.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed|Oryza sativa|NT|509 Length = 509 Plus Strand HSPs: Score = 331 (121.6 bits), Expect = 4.6e-137, Sum P(9) = 4.6e-137, Group = 1 Identities = 61/72 (84%), Positives = 65/72 (90%), Frame = +1 Links = 4-(1)-3-2-8-7-9-5-6 Query: 23971 LFMQIISGVEYCHRNMVAHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPN 24150 +F QIISGVEYCHRNMV HRDLKPENLLLDSK NVK+ADFGLSN+M DGHFLKTSCGSPN Sbjct: 120 IFQQIISGVEYCHRNMVVHRDLKPENLLLDSKYNVKLADFGLSNVMHDGHFLKTSCGSPN 179 Query: 24151 YAAPEVSSSIIY 24186 YAAPEV S +Y Sbjct: 180 YAAPEVISGKLY 191 Score = 294 (108.6 bits), Expect = 4.6e-137, Sum P(9) = 4.6e-137, Group = 1 Identities = 56/63 (88%), Positives = 58/63 (92%), Frame = +2 Links = 4-1-3-(2)-8-7-9-5-6 Query: 24482 GGIYTLPSHLSPSARDLIPRMLVVDPMKRITIREIREHVWFKIRLPRYLAVPPPDTAQQV 24661 GGIYTLPSHLS ARDLIPRMLVVDPMKRITIREIREH WF+IRLPRYLAVPPPDTAQQ Sbjct: 229 GGIYTLPSHLSALARDLIPRMLVVDPMKRITIREIREHQWFQIRLPRYLAVPPPDTAQQA 288 Query: 24662 KKV 24670 K + Sbjct: 289 KMI 291 Score = 237 (88.5 bits), Expect = 4.6e-137, Sum P(9) = 4.6e-137, Group = 1 Identities = 44/44 (100%), Positives = 44/44 (100%), Frame = +2 Links = 4-1-(3)-2-8-7-9-5-6 Query: 24257 VISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIK 24388 VISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIK Sbjct: 185 VISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIK 228 Score = 196 (74.1 bits), Expect = 4.6e-137, Sum P(9) = 4.6e-137, Group = 1 Identities = 38/57 (66%), Positives = 48/57 (84%), Frame = +3 Links = (4)-1-3-2-8-7-9-5-6 Query: 23238 EGAGRDANPLSGYRIGKTLGIGSFGKVKIAEHILTGHKVAIKILNRKKIRSMDMEEK 23408 +G G + L Y +G+TLGIGSFGKVKIAEH LTGH+VAIKILNR+++R+M+MEEK Sbjct: 6 KGGGH-SEALKNYNLGRTLGIGSFGKVKIAEHKLTGHRVAIKILNRRQMRNMEMEEK 61 Score = 192 (72.6 bits), Expect = 4.6e-137, Sum P(9) = 4.6e-137, Group = 1 Identities = 41/78 (52%), Positives = 53/78 (67%), Frame = +1 Links = 4-1-3-2-8-7-9-(5)-6 Query: 25390 QSRAHPREIISEVLKALQELNVYWKKIGHYNMKCRWSPGCLES-MMHNSDSFSAESAIIE 25566 QSRA PREI+ EVLKALQ+LNV WKK G YNMKCRWS G + M+ ++SF +S I++ Sbjct: 395 QSRAQPREIMIEVLKALQDLNVSWKKNGQYNMKCRWSVGTQATDMLDVNNSFVDDSIIMD 454 Query: 25567 TDVFMEKSTPTVKFEIQV 25620 + +KFEIQ+ Sbjct: 455 NGDVNGRLPAVIKFEIQL 472 Score = 159 (61.0 bits), Expect = 4.6e-137, Sum P(9) = 4.6e-137, Group = 1 Identities = 33/46 (71%), Positives = 39/46 (84%), Frame = +2 Links = 4-1-3-2-8-7-9-5-(6) Query: 26306 LIHFHWLQLYKTRDEKYLLDLQRVSGSHLLFLDLCSAFLTQLRVL* 26443 +I F +QLYKTRDEKYLLD+QRV+G LLFLD C+ FLT+LRVL* Sbjct: 465 VIKFE-IQLYKTRDEKYLLDMQRVTGPQLLFLDFCADFLTKLRVL* 509 Score = 121 (47.7 bits), Expect = 4.6e-137, Sum P(9) = 4.6e-137, Group = 1 Identities = 22/29 (75%), Positives = 27/29 (93%), Frame = +3 Links = 4-1-3-2-8-(7)-9-5-6 Query: 24972 QATVAYYLLLDNRLRTTSGYLGSEFQESM 25058 +ATVAYYLLLDNR R TSGYLG+++QES+ Sbjct: 320 EATVAYYLLLDNRFRATSGYLGADYQESL 348 Score = 100 (40.3 bits), Expect = 4.6e-137, Sum P(9) = 4.6e-137, Group = 1 Identities = 17/32 (53%), Positives = 26/32 (81%), Frame = +1 Links = 4-1-3-2-(8)-7-9-5-6 Query: 24820 VDEETLNDVIKMGFDKNQLIESLQNRLQNEVS 24915 +DE+TL DV+ +G+ K+ + ESL+NRLQNE + Sbjct: 291 IDEDTLQDVVNLGYGKDHVCESLRNRLQNEAT 322 Score = 89 (36.4 bits), Expect = 4.6e-137, Sum P(9) = 4.6e-137, Group = 1 Identities = 19/38 (50%), Positives = 24/38 (63%), Frame = +1 Links = 4-1-3-2-8-7-(9)-5-6 Query: 25195 AETPTSATELRQHGFSESPGSGLRQHFAAERKWALGLQ 25308 +E+ +S T G S+ SGLR H+ ERKWALGLQ Sbjct: 358 SESASSNTRHYLPGSSDPHASGLRPHYPVERKWALGLQ 395 Score = 261 (96.9 bits), Expect = 5.4e-21, Sum P(2) = 5.4e-21, Group = 4 Identities = 59/96 (61%), Positives = 68/96 (70%), Frame = +3 Links = 11-(10) Query: 23574 KREIKILRLFMHPHIIRLYEVIDTPADICVVMEYVKSGELFDYIVEKGRLHEEEARHFFQ 23753 KREIKILRLF+HPHIIRLYEVI TP DI VVMEY K GELFDYIVEKGRL E+EAR FQ Sbjct: 63 KREIKILRLFIHPHIIRLYEVIYTPTDIYVVMEYCKFGELFDYIVEKGRLQEDEARRIFQ 122 Query: 23754 Q----VAFLHITMFIPK-IAQCIVILGSK-NCSMVD 23843 Q V + H M + + + ++L SK N + D Sbjct: 123 QIISGVEYCHRNMVVHRDLKPENLLLDSKYNVKLAD 158 Score = 41 (19.5 bits), Expect = 5.4e-21, Sum P(2) = 5.4e-21, Group = 4 Identities = 11/29 (37%), Positives = 17/29 (58%), Frame = +3 Links = (11)-10 Query: 3924 HPDAHPNWQAGRTKGLRE-GRVEAGAERR 4007 H +A N+ GRT G+ G+V+ AE + Sbjct: 10 HSEALKNYNLGRTLGIGSFGKVKI-AEHK 37 Minus Strand HSPs: Score = 331 (121.6 bits), Expect = 4.6e-137, Sum P(9) = 4.6e-137, Group = 2 Identities = 61/72 (84%), Positives = 65/72 (90%), Frame = -1 Links = 15-(12)-14-13-19-18-20-16-17 Query: 2567 LFMQIISGVEYCHRNMVAHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPN 2388 +F QIISGVEYCHRNMV HRDLKPENLLLDSK NVK+ADFGLSN+M DGHFLKTSCGSPN Sbjct: 120 IFQQIISGVEYCHRNMVVHRDLKPENLLLDSKYNVKLADFGLSNVMHDGHFLKTSCGSPN 179 Query: 2387 YAAPEVSSSIIY 2352 YAAPEV S +Y Sbjct: 180 YAAPEVISGKLY 191 Score = 294 (108.6 bits), Expect = 4.6e-137, Sum P(9) = 4.6e-137, Group = 2 Identities = 56/63 (88%), Positives = 58/63 (92%), Frame = -2 Links = 15-12-14-(13)-19-18-20-16-17 Query: 2056 GGIYTLPSHLSPSARDLIPRMLVVDPMKRITIREIREHVWFKIRLPRYLAVPPPDTAQQV 1877 GGIYTLPSHLS ARDLIPRMLVVDPMKRITIREIREH WF+IRLPRYLAVPPPDTAQQ Sbjct: 229 GGIYTLPSHLSALARDLIPRMLVVDPMKRITIREIREHQWFQIRLPRYLAVPPPDTAQQA 288 Query: 1876 KKV 1868 K + Sbjct: 289 KMI 291 Score = 237 (88.5 bits), Expect = 4.6e-137, Sum P(9) = 4.6e-137, Group = 2 Identities = 44/44 (100%), Positives = 44/44 (100%), Frame = -2 Links = 15-12-(14)-13-19-18-20-16-17 Query: 2281 VISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIK 2150 VISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIK Sbjct: 185 VISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIK 228 Score = 196 (74.1 bits), Expect = 4.6e-137, Sum P(9) = 4.6e-137, Group = 2 Identities = 38/57 (66%), Positives = 48/57 (84%), Frame = -3 Links = (15)-12-14-13-19-18-20-16-17 Query: 3300 EGAGRDANPLSGYRIGKTLGIGSFGKVKIAEHILTGHKVAIKILNRKKIRSMDMEEK 3130 +G G + L Y +G+TLGIGSFGKVKIAEH LTGH+VAIKILNR+++R+M+MEEK Sbjct: 6 KGGGH-SEALKNYNLGRTLGIGSFGKVKIAEHKLTGHRVAIKILNRRQMRNMEMEEK 61 Score = 192 (72.6 bits), Expect = 4.6e-137, Sum P(9) = 4.6e-137, Group = 2 Identities = 41/78 (52%), Positives = 53/78 (67%), Frame = -1 Links = 15-12-14-13-19-18-20-(16)-17 Query: 1148 QSRAHPREIISEVLKALQELNVYWKKIGHYNMKCRWSPGCLES-MMHNSDSFSAESAIIE 972 QSRA PREI+ EVLKALQ+LNV WKK G YNMKCRWS G + M+ ++SF +S I++ Sbjct: 395 QSRAQPREIMIEVLKALQDLNVSWKKNGQYNMKCRWSVGTQATDMLDVNNSFVDDSIIMD 454 Query: 971 TDVFMEKSTPTVKFEIQV 918 + +KFEIQ+ Sbjct: 455 NGDVNGRLPAVIKFEIQL 472 Score = 159 (61.0 bits), Expect = 4.6e-137, Sum P(9) = 4.6e-137, Group = 2 Identities = 33/46 (71%), Positives = 39/46 (84%), Frame = -2 Links = 15-12-14-13-19-18-20-16-(17) Query: 232 LIHFHWLQLYKTRDEKYLLDLQRVSGSHLLFLDLCSAFLTQLRVL* 95 +I F +QLYKTRDEKYLLD+QRV+G LLFLD C+ FLT+LRVL* Sbjct: 465 VIKFE-IQLYKTRDEKYLLDMQRVTGPQLLFLDFCADFLTKLRVL* 509 Score = 121 (47.7 bits), Expect = 4.6e-137, Sum P(9) = 4.6e-137, Group = 2 Identities = 22/29 (75%), Positives = 27/29 (93%), Frame = -3 Links = 15-12-14-13-19-(18)-20-16-17 Query: 1566 QATVAYYLLLDNRLRTTSGYLGSEFQESM 1480 +ATVAYYLLLDNR R TSGYLG+++QES+ Sbjct: 320 EATVAYYLLLDNRFRATSGYLGADYQESL 348 Score = 100 (40.3 bits), Expect = 4.6e-137, Sum P(9) = 4.6e-137, Group = 2 Identities = 17/32 (53%), Positives = 26/32 (81%), Frame = -1 Links = 15-12-14-13-(19)-18-20-16-17 Query: 1718 VDEETLNDVIKMGFDKNQLIESLQNRLQNEVS 1623 +DE+TL DV+ +G+ K+ + ESL+NRLQNE + Sbjct: 291 IDEDTLQDVVNLGYGKDHVCESLRNRLQNEAT 322 Score = 89 (36.4 bits), Expect = 4.6e-137, Sum P(9) = 4.6e-137, Group = 2 Identities = 19/38 (50%), Positives = 24/38 (63%), Frame = -1 Links = 15-12-14-13-19-18-(20)-16-17 Query: 1343 AETPTSATELRQHGFSESPGSGLRQHFAAERKWALGLQ 1230 +E+ +S T G S+ SGLR H+ ERKWALGLQ Sbjct: 358 SESASSNTRHYLPGSSDPHASGLRPHYPVERKWALGLQ 395 Score = 261 (96.9 bits), Expect = 5.4e-21, Sum P(2) = 5.4e-21, Group = 3 Identities = 59/96 (61%), Positives = 68/96 (70%), Frame = -3 Links = 22-(21) Query: 2964 KREIKILRLFMHPHIIRLYEVIDTPADICVVMEYVKSGELFDYIVEKGRLHEEEARHFFQ 2785 KREIKILRLF+HPHIIRLYEVI TP DI VVMEY K GELFDYIVEKGRL E+EAR FQ Sbjct: 63 KREIKILRLFIHPHIIRLYEVIYTPTDIYVVMEYCKFGELFDYIVEKGRLQEDEARRIFQ 122 Query: 2784 Q----VAFLHITMFIPK-IAQCIVILGSK-NCSMVD 2695 Q V + H M + + + ++L SK N + D Sbjct: 123 QIISGVEYCHRNMVVHRDLKPENLLLDSKYNVKLAD 158 Score = 41 (19.5 bits), Expect = 5.4e-21, Sum P(2) = 5.4e-21, Group = 3 Identities = 11/29 (37%), Positives = 17/29 (58%), Frame = -3 Links = (22)-21 Query: 22614 HPDAHPNWQAGRTKGLRE-GRVEAGAERR 22531 H +A N+ GRT G+ G+V+ AE + Sbjct: 10 HSEALKNYNLGRTLGIGSFGKVKI-AEHK 37 Parameters: links topcomboN=4 ctxfactor=6.00 E=10 Query ----- As Used ----- ----- Computed ---- Frame MatID Matrix name Lambda K H Lambda K H +3 0 BLOSUM62 0.318 0.134 0.401 0.354 0.156 0.557 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a +2 0 BLOSUM62 0.318 0.134 0.401 0.344 0.150 0.509 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a +1 0 BLOSUM62 0.318 0.134 0.401 0.352 0.155 0.552 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -1 0 BLOSUM62 0.318 0.134 0.401 0.352 0.155 0.553 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -2 0 BLOSUM62 0.318 0.134 0.401 0.352 0.155 0.554 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -3 0 BLOSUM62 0.318 0.134 0.401 0.349 0.153 0.533 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a Query Frame MatID Length Eff.Length E S W T X E2 S2 +3 0 9333 9266 8.8 42 3 12 22 0.21 36 47 0.21 40 +2 0 9333 9265 8.8 42 3 12 22 0.21 36 47 0.21 40 +1 0 9333 9265 8.8 42 3 12 22 0.21 36 47 0.21 40 -1 0 9333 9266 8.8 42 3 12 22 0.21 36 47 0.21 40 -2 0 9333 9265 8.8 42 3 12 22 0.21 36 47 0.21 40 -3 0 9333 9265 8.8 42 3 12 22 0.21 36 47 0.21 40 Statistics: Database: DB/Rice.prot Title: Rice.prot Posted: 10:46:57 AM CEST Apr 19, 2010 Created: 10:46:57 AM CEST Apr 19, 2010 Format: XDF-1 # of letters in database: 509 # of sequences in database: 1 # of database sequences satisfying E: 1 No. of states in DFA: 648 (137 KB) Total size of DFA: 4400 KB (5501 KB) Time to generate neighborhood: 0.10u 0.01s 0.11t Elapsed: 00:00:00 No. of threads or processors used: 1 Search cpu time: 0.00u 0.01s 0.01t Elapsed: 00:00:00 Total cpu time: 0.10u 0.02s 0.12t Elapsed: 00:00:00 Start: Mon Apr 19 10:54:13 2010 End: Mon Apr 19 10:54:13 2010