MEGABLAST 2.2.16 [Mar-25-2007] Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: 00038-00053.fasta 2 sequences; 2001 total letters Searching..................................................done Query= 00038-00053 (802 letters) Score E Sequences producing significant alignments: (bits) Value ______00038 226 1e-62 ______00053 115 3e-29 1_0 472 ccgacaataattcttgttggaatcttcggcagttttttgtacaggagccagtagttcaaa 531 ______00038 883 ccgacaataattcttgttggaatcttcggcagttttttgtacaggagccagtagttcaaa 942 ______00053 ------------------------------------------------------------ 1_0 532 aagaaagcgatcaataaaa-taaaaatcacaaaaaaattaccaaaaacatatttataaat 590 ______00038 943 aagaaagcgatcaataaaaataaaaatcacaaaaaaattaccaaaaacatatttataaa- 1001 ______00053 ------------------------------------------------------------ 1_0 591 attggcaaaaaaattgccaacaattcccaaacggaaaattcccaaaacaaagagagcgtc 650 ______00038 1000 ------------------------------------------------------------ 1001 ______00053 ------------------------------------------------------------ 1_0 651 gataaccaatatcaaaatagtttttgaatttattttttgtgtttttttagtttttcttct 710 ______00038 1000 ------------------------------------------------------------ 1001 ______00053 ------------------------------------------------------------ 1_0 711 acgtcgtgttgccatttatccagcattaagtctataaaaaaaaacggtcagataaaaatg 770 ______00038 1000 ------------------------------------------------------------ 1001 ______00053 1 -------------------------ttaagtctataaaaaaaa-cggtcagataaaaatg 34 1_0 771 ccttaagtatttactttaacttgtcttgatca 802 ______00038 1000 -------------------------------- 1001 ______00053 35 ccttaagtatt-actttaacttgtcttgatca 65 Database: 00038-00053.fasta Posted date: Feb 25, 2010 4:47 PM Number of letters in database: 2001 Number of sequences in database: 2 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 0, Extension: 0 Number of Sequences: 2 Number of Hits to DB: 17 Number of extensions: 3 Number of successful extensions: 3 Number of sequences better than 10.0: 2 Number of HSP's gapped: 2 Number of HSP's successfully gapped: 2 Length of query: 802 Length of database: 2001 Length adjustment: 10 Effective length of query: 792 Effective length of database: 1981 Effective search space: 1568952 Effective search space used: 1568952 X1: 9 (17.8 bits) X2: 20 (39.6 bits) X3: 51 (101.1 bits) S1: 9 (18.3 bits) S2: 9 (18.3 bits)