BLASTN 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 
         (286 letters)

Database: RB_GUS 
           1 sequences; 450 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RB_GUS                                                                101   3e-026

>RB_GUS 
          Length = 450

 Score =  101 bits (51), Expect = 3e-026
 Identities = 110/127 (86%), Gaps = 2/127 (1%)
 Strand = Plus / Plus

                                                                       
Query: 147 ctctttactcttaggtttacccgccggggtatcgtggcaaacaaggatagtttaaacaga 206
           |||||| ||||||||||||||||||    |||| || ||||||  |||||||||||| ||
Sbjct: 114 ctcttttctcttaggtttacccgccaatatatcctgtcaaacactgatagtttaaactga 173

                                                                       
Query: 207 aggggggaaaagaaaatgtg-tccaagctcaagataagcttcaggtaagaggtaagaagg 265
           ||| |||||| || ||| || |||||||||||| |||||||||||||||||||||| |||
Sbjct: 174 aggcgggaaacgacaatctgatccaagctcaagctaagcttcaggtaagaggtaag-agg 232

                  
Query: 266 taagaga 272
           |||||||
Sbjct: 233 taagaga 239



 Score = 44.1 bits (22), Expect = 6e-009
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 90  ggacgaatagataaaccttttcaggcccgtttaaatat 127
           |||||||  |||||||||||||| |||| |||||||||
Sbjct: 58  ggacgaacggataaaccttttcacgcccttttaaatat 95


  Database: RB_GUS
    Posted date:  Sep 3, 2007 11:18 PM
  Number of letters in database: 450
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 286
Length of database: 450
Length adjustment: 8
Effective length of query: 278
Effective length of database: 442
Effective search space:   122876
Effective search space used:   122876
X1: 7 (13.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 7 (14.4 bits)
S2: 7 (14.4 bits)