##maf version=1
#Sat May 24 20:46:02 2008
#The start coordinate is a zero-based number.
#For segments in the negative strand, the start
#is relative to the end of the chromosome. Please, refer to
#http://genome.ucsc.edu/FAQ/FAQformat#format5 for a
#description of this file format.

s btau.chr29   24988385     118 -       45135891 AGTTGTATGCTTACCAAGAGAGAGTTGC--TTGTTCGCAAGCCTTTTTATGCCAGTTGTTCTTCTACTGTAGTTATATGATTTAACTAAATATGAGATAAATCAATGACATTTCAGTGCA 
s hsap.chr1    94918908     120 +      247249719 AGCTATATGCTTACCAGGGGGCAGCTGCACTTGTCCCCAAGCCTGTTTATGGCAACAGTCCTTTAATTGTAACCATGTAATTTACTTGAGTATCAAATAAACCAATGAAATACAAGTGCA 

s btau.chr29   34833260     482 +       45135891 AAGTTAAATGCTATCCCTGAAAATAAGCAGAACAGTTTCAAAAGTCACAAGTAGAGGGGAGGCCTTGTTACTTATTTTTTAAAATGTTCATTAGGCTCCAGTGAT--------TGTTTGCTACTATTCTTTTCTACAGTCATGCTGAGTAAAGCTATAGCTAAAGGGAAGTTAAACTGTGTTCATGAAGCGTTAAGGTTTACCTCTTTTTATCTGCAGTCTCTCAGAGAAAGC-AAAGTAACTACAAATAGCGCTACACCAGAAACGAGTTTCTTGACCAACAATGTCGCTTCAGCACGCGATGAACTGGTTCACTCTAAAGTGGTCACGGCTGTTGAAGACAAGAGGTTTTGTATTTTTATATGGCACATCTTTTTGGTCCCTGTGAAAACAAGTTTTCTTGAATGTGAACTATCCTCTGACATTTGTGGAGTTACTATCACTCTTCCTATATCCATTAGATCGATATATGGCTCAAGG-----CTGCACAAGTT 
s hsap.chr1    41175533     455 +      247249719 AAATTAAATGGTATCCCTGAAAATAAACAGAACGATTTCAAAACCCTTAAGTAGAGGGGAGGGCTTGGCATTTATTTTTTTTAAT-TTCATTAAGTTCCAGTGATCCAGTGATTGTTTTCTGCTACCCCTATGTACAGTCATGCTGAGTAAAGCTATAGCTAGATGGAGGTTAAATTGTATTCACAAAGTG----AATTTACATCTTATTATCTGCGGTCTCTCAAAGAAAGCAAAAGTAACTGCAAAC-------------------------------ACCATGTTGCTCCAGCATACAATGAACTGGTTTATTCTAAAGTGATCACGGC--TTGGTGACAAAAAGCTTTGTATTTTTATATGGCACAGC-TTTTAGTCCATGTGAAAACAAATTTT-TTGAATGTTAACTATTTTCTGACACTT-TGGAGTTACTGTTGCTGTCCCCATTTCCATTAAGTCAATATACAATTCATGGCAATCCTGTTCAAATT