Last login: Wed Jan 23 20:00:40 on console hc6521e39:~ katherinewendelsdorf$ perl -MCPAN -e "install Bio::SeqIO > " CPAN: Storable loaded ok Going to read /Users/katherinewendelsdorf/.cpan/Metadata Database was generated on Sun, 20 Jan 2008 23:37:55 GMT CPAN: LWP::UserAgent loaded ok Fetching with LWP: /authors/01mailrc.txt.gz LWP failed with code[400] message[URL must be absolute] Fetching with LWP: ftp://cpan-du.viaverio.com/pub/CPAN/authors/01mailrc.txt.gz Going to read /Users/katherinewendelsdorf/.cpan/sources/authors/01mailrc.txt.gz CPAN: Compress::Zlib loaded ok Fetching with LWP: /modules/02packages.details.txt.gz LWP failed with code[400] message[URL must be absolute] Fetching with LWP: ftp://cpan-du.viaverio.com/pub/CPAN/modules/02packages.details.txt.gz Going to read /Users/katherinewendelsdorf/.cpan/sources/modules/02packages.details.txt.gz Database was generated on Wed, 23 Jan 2008 23:30:57 GMT There's a new CPAN.pm version (v1.9205) available! [Current version is v1.7602] You might want to try install Bundle::CPAN reload cpan without quitting the current session. It should be a seamless upgrade while we are running... Fetching with LWP: /modules/03modlist.data.gz LWP failed with code[400] message[URL must be absolute] Fetching with LWP: ftp://cpan-du.viaverio.com/pub/CPAN/modules/03modlist.data.gz Going to read /Users/katherinewendelsdorf/.cpan/sources/modules/03modlist.data.gz Going to write /Users/katherinewendelsdorf/.cpan/Metadata Warning: Cannot install Bio::SeqIO, don't know what it is. Try the command i /Bio::SeqIO/ to find objects with matching identifiers. hc6521e39:~ katherinewendelsdorf$ i /Bio::SeqIO -bash: i: command not found hc6521e39:~ katherinewendelsdorf$ i /Bio::SeqIO/ -bash: i: command not found hc6521e39:~ katherinewendelsdorf$ perl -MCPAN -e "install bioperl-live::Bio::SeqIO" CPAN: Storable loaded ok Going to read /Users/katherinewendelsdorf/.cpan/Metadata Database was generated on Wed, 23 Jan 2008 23:30:57 GMT Warning: Cannot install 0, don't know what it is. Try the command i /0/ to find objects with matching identifiers. hc6521e39:~ katherinewendelsdorf$ which bioperl hc6521e39:~ katherinewendelsdorf$ which bioperl-pm586 hc6521e39:~ katherinewendelsdorf$ which perl /usr/bin/perl hc6521e39:~ katherinewendelsdorf$ which bioperl-run-pm586 hc6521e39:~ katherinewendelsdorf$ perl Desktop/test2.pl hc6521e39:~ katherinewendelsdorf$ perl Desktop/test2.pl Can't open perl script "Desktop/test2.pl": No such file or directory hc6521e39:~ katherinewendelsdorf$ cd Desktop/bioperl-pm586/ hc6521e39:bioperl-pm586 katherinewendelsdorf$ perl test2.pl hc6521e39:bioperl-pm586 katherinewendelsdorf$