>xxx BLASTN 2.2.17 (Jun-24-2007) RID: CP3ZF1SR01R Database: human build 36 RNA, alternate and reference assemblies. 46,285 sequences; 5,957,977,502 total letters Query= gi|141803330|ref|NM_009692.2| Mus musculus apolipoprotein A-I (Apoa1), mRNA Length=922 Score E Sequences producing significant alignments: (Bits) Value ref|NM_000039.1| Homo sapiens apolipoprotein A-I (APOA1), mRNA 484 6e-134 ref|NT_113960.1|Hs22_111679 Homo sapiens chromosome 22 genomic c 137 2e-29 ref|NT_033899.7|Hs11_34054 Homo sapiens chromosome 11 genomic co 137 2e-29 ref|NW_925173.1|HsCraAADB02_444 Homo sapiens chromosome 11 ge... 137 2e-29 ALIGNMENTS >ref|NM_000039.1| Homo sapiens apolipoprotein A-I (APOA1), mRNA Length=897 Score = 484 bits (262), Expect = 6e-134 Identities = 631/800 (78%), Gaps = 62/800 (7%) Strand=Plus/Plus Query 24 GGAGGTCACCCAC-ACCCTTCAGGATGAAAGCTGTGGTGCTGGCCGTGGCTC-TGGTCTT 81 ||||||| ||||| ||||||||||||||||||| ||||||| || |||| | || |||| Sbjct 15 GGAGGTCCCCCACGGCCCTTCAGGATGAAAGCTGCGGTGCTGACCTTGGC-CGTGCTCTT 73 Query 82 CCTGACAGGGAGCCAGGCTTGGCACGTATGGCAGCAAGATGAA---CCCCAG-TCCCAAT 137 |||||| |||||||||||| |||| | ||||||||||||||| |||||| ||| | Sbjct 74 CCTGACGGGGAGCCAGGCTCGGCATTTCTGGCAGCAAGATGAACCCCCCCAGAGCCC-CT 132 Query 138 GGGA-CAAAGTGAAGGATTTCGCTAATGTGTATGTGGATGCGGTCAAAGACAGCGGCAGA 196 |||| | ||||||||| | || | |||||| ||||||| | ||||||||||||||||| Sbjct 133 GGGATC-GAGTGAAGGACCTGGCCACTGTGTACGTGGATGTGCTCAAAGACAGCGGCAGA 191 Query 197 GACTATGTGTCCCAGTTTGAATCCTCCTCCTTGGGCCAACAGCTGAACCTGAATCTCCTG 256 ||||||||||||||||||||| |||| ||||||| ||||||| ||||| || ||||| Sbjct 192 GACTATGTGTCCCAGTTTGAAGGCTCCGCCTTGGGAAAACAGCTAAACCTAAAGCTCCTT 251 Query 257 GAAAACTGGGACA-CTCTGGGTTCAACCGTT-AGTCA-GCTGCAG-GAACGGCTGGGCCC 312 || |||||||||| | || || ||| || || || ||||| | |||| ||| ||||| Sbjct 252 GACAACTGGGACAGCG-TGACCTCCACC-TTCAG-CAAGCTGC-GCGAACAGCTCGGCCC 307 Query 313 AT-TGACTCGGGACTTCTGGGATAACCTGGAGAAAGAA-ACAGATTGGG--TGAGACAGG 368 | |||| | ||| ||||||||||||||||| |||| | ||||| ||| |||| |||| Sbjct 308 -TGTGACCCAGGAGTTCTGGGATAACCTGGA-AAAGGAGACAGA--GGGCCTGAGGCAGG 363 Query 369 AGATGAACAAGGACCTAGAGGAAGTGAAA-CAGAAGGTGCAGCCCTACCTGGACGAATTC 427 |||||| |||||| || ||||| ||||| | ||||||||||||||||||||||| ||| Sbjct 364 AGATGAGCAAGGATCTGGAGGAGGTGAAGGCC-AAGGTGCAGCCCTACCTGGACGACTTC 422 Query 428 CAGAAGAAATGGAAAGAGGATG-TGGAGCTCTACCGCCAGAAGGTGGCGCCTCTGGGCGC 486 |||||||| ||| | ||||| | |||||||||||||||||||||||| ||| ||| |||| Sbjct 423 CAGAAGAAGTGGCAGGAGGA-GATGGAGCTCTACCGCCAGAAGGTGGAGCCGCTGCGCGC 481 Query 487 CGAGCTGCAGGAGAGCGCGCGCCAGAAGCTGCAGGAGCTGCAAGGGA-GACTGT-CCC-C 543 ||||| || ||| ||||||||||||||||||| |||||||||| || | ||| ||| | Sbjct 482 AGAGCTCCAAGAGGGCGCGCGCCAGAAGCTGCACGAGCTGCAAGAGAAG-CTGAGCCCAC 540 Query 544 TGTGGCTGAGGA-ATTTCGCGACCGCATGCGCACACACGTAGACTCTCTGCGCACACAGC 602 || ||| ||||| || ||||||||| |||| | || || ||| | |||||||| || | Sbjct 541 TG-GGC-GAGGAGATG-CGCGACCGCGCGCGCGCCCATGTGGACGCGCTGCGCACGCATC 597 Query 603 TAGCGCCCC-ACAGCGAAC-AGATGCGCGAGAGCCTGGCC-CAGCGCCTGGCTGAGCTCA 659 | || |||| ||||||| | || ||||| || || ||||| | |||||| | | |||| Sbjct 598 TGGC-CCCCTACAGCGA-CGAGCTGCGCCAGCGCTTGGCCGC-GCGCCTTGAGGCTCTCA 654 Query 660 AG-AGCAACC-CTAC-CTTGAA---C-GAGTACCACACCAGGGCCAAA-ACCCACCTGAA 711 || || ||| | | | || | ||||||||| ||| ||||| | | | |||| Sbjct 655 AGGAG-AACGGCGGCGCCAGACTGGCCGAGTACCACGCCAAGGCCACCGAGC-ATCTGA- 711 Query 712 G-ACACTTGGCGAGAAAGCCA-GACCTGCGCTGGAGGACCTGCGCCATAGTC-TGATGCC 768 | || || ||||||| |||| | || ||||| |||||||| ||||| || | || |||| Sbjct 712 GCACGCTCAGCGAGAAGGCCAAGCCC-GCGCTCGAGGACCTCCGCCA-AGGCCTGCTGCC 769 Query 769 CATGCTGGAGACGCTT-AAG 787 | ||||||||| |||| ||| Sbjct 770 CGTGCTGGAGA-GCTTCAAG 788 >ref|NT_113960.1|Hs22_111679 Homo sapiens chromosome 22 genomic contig, reference assembly Length=40752 Score = 137 bits (74), Expect = 2e-29 Identities = 132/159 (83%), Gaps = 7/159 (4%) Strand=Plus/Plus Query 87 CAGGGAGCCAGGCTTGGCACGTATGGCAGCAAGATGAA---CCCCAG-TCCCAATGGGA- 141 |||||||||||||| |||| | ||||||||||||||| |||||| ||| ||||| Sbjct 13960 CAGGGAGCCAGGCTCGGCATTTCTGGCAGCAAGATGAACCCCCCCAGAGCCC-CTGGGAT 14018 Query 142 CAAAGTGAAGGATTTCGCTAATGTGTATGTGGATGCGGTCAAAGACAGCGGCAGAGACTA 201 | ||||||||| | || | |||||| ||||||| | |||||||||||||||||||||| Sbjct 14019 C-GAGTGAAGGACCTGGCCACTGTGTACGTGGATGTGCTCAAAGACAGCGGCAGAGACTA 14077 Query 202 TGTGTCCCAGTTTGAATCCTCCTCCTTGGGCCAACAGCT 240 |||||||||||||||| |||| ||||||| ||||||| Sbjct 14078 TGTGTCCCAGTTTGAAGGCTCCGCCTTGGGAAAACAGCT 14116 >ref|NT_033899.7|Hs11_34054 Homo sapiens chromosome 11 genomic contig, reference assembly Length=38509590 Features in this part of subject sequence: apolipoprotein A-I preproprotein Score = 137 bits (74), Expect = 2e-29 Identities = 132/159 (83%), Gaps = 7/159 (4%) Strand=Plus/Minus Query 87 CAGGGAGCCAGGCTTGGCACGTATGGCAGCAAGATGAA---CCCCAG-TCCCAATGGGA- 141 |||||||||||||| |||| | ||||||||||||||| |||||| ||| ||||| Sbjct 20270292 CAGGGAGCCAGGCTCGGCATTTCTGGCAGCAAGATGAACCCCCCCAGAGCCC-CTGGGAT 20270234 Query 142 CAAAGTGAAGGATTTCGCTAATGTGTATGTGGATGCGGTCAAAGACAGCGGCAGAGACTA 201 | ||||||||| | || | |||||| ||||||| | |||||||||||||||||||||| Sbjct 20270233 C-GAGTGAAGGACCTGGCCACTGTGTACGTGGATGTGCTCAAAGACAGCGGCAGAGACTA 20270175 Query 202 TGTGTCCCAGTTTGAATCCTCCTCCTTGGGCCAACAGCT 240 |||||||||||||||| |||| ||||||| ||||||| Sbjct 20270174 TGTGTCCCAGTTTGAAGGCTCCGCCTTGGGAAAACAGCT 20270136 >ref|NW_925173.1|HsCraAADB02_444 Homo sapiens chromosome 11 genomic contig, alternate assembly (based on Celera assembly) Length=44976370 Features in this part of subject sequence: apolipoprotein A-I preproprotein Score = 137 bits (74), Expect = 2e-29 Identities = 132/159 (83%), Gaps = 7/159 (4%) Strand=Plus/Minus Query 87 CAGGGAGCCAGGCTTGGCACGTATGGCAGCAAGATGAA---CCCCAG-TCCCAATGGGA- 141 |||||||||||||| |||| | ||||||||||||||| |||||| ||| ||||| Sbjct 26734579 CAGGGAGCCAGGCTCGGCATTTCTGGCAGCAAGATGAACCCCCCCAGAGCCC-CTGGGAT 26734521 Query 142 CAAAGTGAAGGATTTCGCTAATGTGTATGTGGATGCGGTCAAAGACAGCGGCAGAGACTA 201 | ||||||||| | || | |||||| ||||||| | |||||||||||||||||||||| Sbjct 26734520 C-GAGTGAAGGACCTGGCCACTGTGTACGTGGATGTGCTCAAAGACAGCGGCAGAGACTA 26734462 Query 202 TGTGTCCCAGTTTGAATCCTCCTCCTTGGGCCAACAGCT 240 |||||||||||||||| |||| ||||||| ||||||| Sbjct 26734461 TGTGTCCCAGTTTGAAGGCTCCGCCTTGGGAAAACAGCT 26734423 Database: human build 36 RNA, alternate and reference assemblies. Posted date: Nov 6, 2006 9:33 AM Number of letters in database: 1,663,010,206 Number of sequences in database: 46,285 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.33 0.621 1.12 Matrix: blastn matrix:1 -2 Gap Penalties: Existence: 0, Extension: 0 Number of Sequences: 46285 Number of Hits to DB: 988476 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 922 Length of database: 5957977502 Length adjustment: 31 Effective length of query: 891 Effective length of database: 5956542667 Effective search space: 5307279516297 Effective search space used: 5307279516297 A: 0 X1: 17 (32.7 bits) X2: 32 (59.1 bits) X3: 54 (99.7 bits) S1: 17 (32.5 bits) S2: 21 (39.9 bits)