[From nobody Mon Sep 18 18:42:31 2006
Message-ID: <44F8645D.6050104@bcm.tmc.edu>
Date: Fri, 01 Sep 2006 11:48:29 -0500
From: Caleb Davis <cdavis@bcm.tmc.edu>
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To: bioperl-l@lists.open-bio.org
Subject: Re: [Bioperl-l] trouble with pairwise_kaks.PLS on Cygwin/XP platform
References: <C11D0103.9E80%osborne1@optonline.net>
In-Reply-To: <C11D0103.9E80%osborne1@optonline.net>
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Brian,

I tried changing the tmpdir environmental variable using the different 
path formats you suggested, and the only one that works for the clustalw 
wrappers is the c:/cygwin/tmp type.  None of them execute the script all 
the way through...?

--Caleb

Brian Osborne wrote:
> Caleb,
>
> In Cygwin there are 3 possible formats for a given path. Examples:
>
> /cygdrive/c/cygwin/tmp
> c:/cygwin/tmp
> /tmp
>
> What works will depend on the application and how it was compiled. Have you
> tried all variations?
>
> Brian O.
>
>
> On 8/31/06 8:00 PM, "Caleb F. Davis" <cdavis@bcm.tmc.edu> wrote:
>
>   
>> out why.  I'm guessing it has something to do with the tmpdir
>> environmental variable and the differences between windows and unix 
>>     
>
>
>   


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