HIT-NUMBER=1.1 HIT-NAME=AF414005[HIV-1_isolate_98BY10443_clone_1- HIT-ACCESSION=AF414005[HIV-1_isolate_98BY10443_clone_1- HIT-ROW-SCORE=3689 HIT-BITS=3689 HIT-GAPS=0 HIT-EVALUE=0.0 HIT-PERCENT-IDENTITY=100 ALLIGNMENT=START CLUSTAL W(1.81) multiple sequence alignment 3_649_77/1-1861 gggacaattggagaagtgaattatataagtataaagtagtaaaaattgaaccattaggag AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 gggacaattggagaagtgaattatataagtataaagtagtaaaaattgaaccattaggag ************************************************************ 3_649_77/1-1861 tagcacccaccaaggcaaagagaagagtggtgcagagagagaaaagagcagtgggaatag AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 tagcacccaccaaggcaaagagaagagtggtgcagagagagaaaagagcagtgggaatag ************************************************************ 3_649_77/1-1861 gagctgtgttccttgggttcttgggagcagcaggaagcactatgagcgcggcgtcaatca AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 gagctgtgttccttgggttcttgggagcagcaggaagcactatgagcgcggcgtcaatca ************************************************************ 3_649_77/1-1861 cgctgacggtacaggccagacaattattgcctggtatagtgcaacagcagaataatctgc AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 cgctgacggtacaggccagacaattattgcctggtatagtgcaacagcagaataatctgc ************************************************************ 3_649_77/1-1861 tgagggctattgaggcgcaacaacatctgttgcaactcacagtctggggcatcaagcagc AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 tgagggctattgaggcgcaacaacatctgttgcaactcacagtctggggcatcaagcagc ************************************************************ 3_649_77/1-1861 tccaggcgagagtcctggctgtggagagatacctaaaggatcaacagctcctggggattt AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 tccaggcgagagtcctggctgtggagagatacctaaaggatcaacagctcctggggattt ************************************************************ 3_649_77/1-1861 ggggttgctctggaaaactcatttgcaccactgctgtgccttggaatactagttggagta AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 ggggttgctctggaaaactcatttgcaccactgctgtgccttggaatactagttggagta ************************************************************ 3_649_77/1-1861 ataaatctctagatgacatttggaataacatgacctggatggagtgggaaagagaaatta AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 ataaatctctagatgacatttggaataacatgacctggatggagtgggaaagagaaatta ************************************************************ 3_649_77/1-1861 ataattacacaggtttaatatacactttaatagaagaatcgcagaaccaacaagaaaaga AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 ataattacacaggtttaatatacactttaatagaagaatcgcagaaccaacaagaaaaga ************************************************************ 3_649_77/1-1861 atgaacaagaattattggcattagataaatgggcaagtttgtggaattggtttgacatat AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 atgaacaagaattattggcattagataaatgggcaagtttgtggaattggtttgacatat ************************************************************ 3_649_77/1-1861 caaactggctgtggtatataaaaatattcataatgatagtaggaggcttggtaggtttaa AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 caaactggctgtggtatataaaaatattcataatgatagtaggaggcttggtaggtttaa ************************************************************ 3_649_77/1-1861 gaataatttttgctgtactttctctagtgaatagagttaggcagggatattcaccattat AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 gaataatttttgctgtactttctctagtgaatagagttaggcagggatattcaccattat ************************************************************ 3_649_77/1-1861 catttcagacccgcctcccaacccagaggggacccgacaggcccgaaggaatagaagaag AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 catttcagacccgcctcccaacccagaggggacccgacaggcccgaaggaatagaagaag ************************************************************ 3_649_77/1-1861 aaggtggaaagagagacagagacacatccattcgattagtgaacggattcttagcactta AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 aaggtggaaagagagacagagacacatccattcgattagtgaacggattcttagcactta ************************************************************ 3_649_77/1-1861 tctgggacgacctgaggagcctgtgcctctgcatctaccaccacttgagagacttactct AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 tctgggacgacctgaggagcctgtgcctctgcatctaccaccacttgagagacttactct ************************************************************ 3_649_77/1-1861 tgattgcagcgaggattgtggaacttctgggacacagggggtgggaagccctcaaatatt AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 tgattgcagcgaggattgtggaacttctgggacacagggggtgggaagccctcaaatatt ************************************************************ 3_649_77/1-1861 ggtggaatcttctacagtattggattcaggaactaaagagtagtgctattaatctgataa AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 ggtggaatcttctacagtattggattcaggaactaaagagtagtgctattaatctgataa ************************************************************ 3_649_77/1-1861 ataccatagcaatagcagtagctgggtggacagatagggttatagaaataggacaaagat AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 ataccatagcaatagcagtagctgggtggacagatagggttatagaaataggacaaagat ************************************************************ 3_649_77/1-1861 tttgtagagctatacgtaacatacctaggagaatcagacagggcgcagaaaaggctttgc AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 tttgtagagctatacgtaacatacctaggagaatcagacagggcgcagaaaaggctttgc ************************************************************ 3_649_77/1-1861 aataacatggggggcaaatggtcaaaaagtagcatagtgggatggcctcaggttagggaa AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 aataacatggggggcaaatggtcaaaaagtagcatagtgggatggcctcaggttagggaa ************************************************************ 3_649_77/1-1861 agaataagacgagctcctgctccagcagcaagaggagtaggaccagtatctcaagatttg AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 agaataagacgagctcctgctccagcagcaagaggagtaggaccagtatctcaagatttg ************************************************************ 3_649_77/1-1861 gataagtatggagcagtcacaagcagtaatacagcagctactaatgctgattgcgcctgg AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 gataagtatggagcagtcacaagcagtaatacagcagctactaatgctgattgcgcctgg ************************************************************ 3_649_77/1-1861 ctggaggcgcaaaaggaagaggaggtaggctttccagtcaggccgcaggtacctgtgaga AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 ctggaggcgcaaaaggaagaggaggtaggctttccagtcaggccgcaggtacctgtgaga ************************************************************ 3_649_77/1-1861 ccgatgacatataaggcagctttcgatctcagccactttttaaaagaaaaggggggactg AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 ccgatgacatataaggcagctttcgatctcagccactttttaaaagaaaaggggggactg ************************************************************ 3_649_77/1-1861 gatgggttaatttactccaagaaaagacaggaaatccttgatctgtgggtctatcacaca AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 gatgggttaatttactccaagaaaagacaggaaatccttgatctgtgggtctatcacaca ************************************************************ 3_649_77/1-1861 caaggctccttccctgattggcagaattataccccagggccagggattagattcccgcta AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 caaggctccttccctgattggcagaattataccccagggccagggattagattcccgcta ************************************************************ 3_649_77/1-1861 acatttggatggtgctacaagctagtaccagtcgacccagaggaagtagaagaggccaca AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 acatttggatggtgctacaagctagtaccagtcgacccagaggaagtagaagaggccaca ************************************************************ 3_649_77/1-1861 gagggagagaacaacagcctattacaccctatatgccagcacggaaaggatgatgaggaa AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 gagggagagaacaacagcctattacaccctatatgccagcacggaaaggatgatgaggaa ************************************************************ 3_649_77/1-1861 aaagaagtgttaatgtggaagtttgacagtcgcctggctctaacacacagagcccgagag AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 aaagaagtgttaatgtggaagtttgacagtcgcctggctctaacacacagagcccgagag ************************************************************ 3_649_77/1-1861 ctgcatccggagttctacaaagactgctgacacagactgctgacgtgaagttgctgacag AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 ctgcatccggagttctacaaagactgctgacacagactgctgacgtgaagttgctgacag ************************************************************ 3_649_77/1-1861 ggactttccgcggggactttccaggggaggtgtgatttgggcggagttggggagtggcta AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 ggactttccgcggggactttccaggggaggtgtgatttgggcggagttggggagtggcta ************************************************************ 3_649_77/1-1861 a AF414005[HIV-1_isolate_98BY10443_clone_1-/1-1861 a * END HIT-NUMBER=2.1 HIT-NAME=AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.] HIT-ACCESSION=AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.] HIT-ROW-SCORE=3642 HIT-BITS=3642 HIT-GAPS=0 HIT-EVALUE=0.0 HIT-PERCENT-IDENTITY=99.677592692101 ALLIGNMENT=START CLUSTAL W(1.81) multiple sequence alignment 3_649_77/1-1861 gggacaattggagaagtgaattatataagtataaagtagtaaaaattgaaccattaggag AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 gggacaattggagaagtaaattatataaatataaagtagtaaaaattgaaccattaggag ***************** ********** ******************************* 3_649_77/1-1861 tagcacccaccaaggcaaagagaagagtggtgcagagagagaaaagagcagtgggaatag AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 tagcacccaccaaggcaaagagaagagtggtgcagggagagaaaagagcagtgggaatag *********************************** ************************ 3_649_77/1-1861 gagctgtgttccttgggttcttgggagcagcaggaagcactatgagcgcggcgtcaatca AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 gagctgtgttccttgggttcttgggagcagcaggaagcactatgggcgcggcgtcaatca ******************************************** *************** 3_649_77/1-1861 cgctgacggtacaggccagacaattattgcctggtatagtgcaacagcagaataatctgc AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 cgctgacggtacaggccagacaattattgtctggtatagtgcaacagcagaataatctgc ***************************** ****************************** 3_649_77/1-1861 tgagggctattgaggcgcaacaacatctgttgcaactcacagtctggggcatcaagcagc AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 tgagggctattgaggcgcaacaacatctgttgcaactcacagtctggggcatcaagcagc ************************************************************ 3_649_77/1-1861 tccaggcgagagtcctggctgtggagagatacctaaaggatcaacagctcctggggattt AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 tccaggcgagagtcctggctgtggagagatacctaaaggatcaacagctcctggggattt ************************************************************ 3_649_77/1-1861 ggggttgctctggaaaactcatttgcaccactgctgtgccttggaatactagttggagta AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 ggggttgctctggaaaactcatttgcaccactgctgtgccttggaatactagttggagta ************************************************************ 3_649_77/1-1861 ataaatctctagatgacatttggaataacatgacctggatggagtgggaaagagaaatta AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 ataaatctctagatgacatttggaataacatgacctggatggagtgggaaagagaaatta ************************************************************ 3_649_77/1-1861 ataattacacaggtttaatatacactttaatagaagaatcgcagaaccaacaagaaaaga AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 ataattacacaggtttaatatacactttaatagaagaatcgcagaaccaacaagaaaaga ************************************************************ 3_649_77/1-1861 atgaacaagaattattggcattagataaatgggcaagtttgtggaattggtttgacatat AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 atgaacaagaattattggcattagataaatgggcaagtttgtggaattggtttgacatat ************************************************************ 3_649_77/1-1861 caaactggctgtggtatataaaaatattcataatgatagtaggaggcttggtaggtttaa AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 caaactggctgtggtatataaaaatattcataatgatagtaggaggcttggtaggtttaa ************************************************************ 3_649_77/1-1861 gaataatttttgctgtactttctctagtgaatagagttaggcagggatattcaccattat AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 gaataatttttgctgtactttctctagtgaatagagttaggcagggatattcaccattat ************************************************************ 3_649_77/1-1861 catttcagacccgcctcccaacccagaggggacccgacaggcccgaaggaatagaagaag AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 catttcagacccgcctcccaacccagaggggacccgacaggcccgaaggaatcgaagaag **************************************************** ******* 3_649_77/1-1861 aaggtggaaagagagacagagacacatccattcgattagtgaacggattcttagcactta AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 aaggtggaaagagagacagagacacatccattcgattagtgaacggattcttagcactta ************************************************************ 3_649_77/1-1861 tctgggacgacctgaggagcctgtgcctctgcatctaccaccacttgagagacttactct AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 tctgggacgacctgaggagcctgtgcctctgcatctaccaccacttgagagacttactct ************************************************************ 3_649_77/1-1861 tgattgcagcgaggattgtggaacttctgggacacagggggtgggaagccctcaaatatt AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 tgattgcagcgaggattgtggaacttctgggacacagggggtgggaagccctcaaatatt ************************************************************ 3_649_77/1-1861 ggtggaatcttctacagtattggattcaggaactaaagagtagtgctattaatctgataa AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 ggtggaatcttctacagtattggattcaggaactaaagagtagtgctattaatctgataa ************************************************************ 3_649_77/1-1861 ataccatagcaatagcagtagctgggtggacagatagggttatagaaataggacaaagat AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 ataccatagcaatagcagtagctgggtggacagatagggttatagaaataggacaaagat ************************************************************ 3_649_77/1-1861 tttgtagagctatacgtaacatacctaggagaatcagacagggcgcagaaaaggctttgc AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 tttgtagagctatacgtaacatacctaggagaatcagacagggcgcagaaaaggctttgc ************************************************************ 3_649_77/1-1861 aataacatggggggcaaatggtcaaaaagtagcatagtgggatggcctcaggttagggaa AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 aataacatggggggcaaatggtcaaaaagtagcatagtgggatggcctcaggttagggaa ************************************************************ 3_649_77/1-1861 agaataagacgagctcctgctccagcagcaagaggagtaggaccagtatctcaagatttg AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 agaataagacgagctcctgctccagcagcaagaggagtaggaccagtatctcaagatttg ************************************************************ 3_649_77/1-1861 gataagtatggagcagtcacaagcagtaatacagcagctactaatgctgattgcgcctgg AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 gataagtatggagcagtcacaagcagtaatacagcagctactaatgctgattgcgcctgg ************************************************************ 3_649_77/1-1861 ctggaggcgcaaaaggaagaggaggtaggctttccagtcaggccgcaggtacctgtgaga AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 ctggaggcgcaaaaggaagaggaggtaggctttccagtcaggccgcaggtacctgtgaga ************************************************************ 3_649_77/1-1861 ccgatgacatataaggcagctttcgatctcagccactttttaaaagaaaaggggggactg AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 ccgatgacatataaggcagctttcgatctcagccactttttaaaagaaaaggggggactg ************************************************************ 3_649_77/1-1861 gatgggttaatttactccaagaaaagacaggaaatccttgatctgtgggtctatcacaca AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 gatgggttaatttactccaagaaaagacaggaaatccttgatctgtgggtctatcacaca ************************************************************ 3_649_77/1-1861 caaggctccttccctgattggcagaattataccccagggccagggattagattcccgcta AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 caaggctccttccctgattggcagaattataccccagggccagggattagattcccgcta ************************************************************ 3_649_77/1-1861 acatttggatggtgctacaagctagtaccagtcgacccagaggaagtagaagaggccaca AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 acatttggatggtgctacaagctagtaccagtcgacccagaggaagtagaagaggccaca ************************************************************ 3_649_77/1-1861 gagggagagaacaacagcctattacaccctatatgccagcacggaaaggatgatgaggaa AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 gagggagagaacaacagcctattacaccctatatgccagcacggaaaggatgatgaggaa ************************************************************ 3_649_77/1-1861 aaagaagtgttaatgtggaagtttgacagtcgcctggctctaacacacagagcccgagag AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 aaagaagtgttaatgtggaagtttgacagtcgcctggctctaacacacagagcccgagag ************************************************************ 3_649_77/1-1861 ctgcatccggagttctacaaagactgctgacacagactgctgacgtgaagttgctgacag AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 ctgcatccggagttctacaaagactgctgacacagactgctgacgtgaagttgctgacag ************************************************************ 3_649_77/1-1861 ggactttccgcggggactttccaggggaggtgtgatttgggcggagttggggagtggcta AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 ggactttccgcggggactttccaggggaggtgtgatttgggcggagttggggagtggcta ************************************************************ 3_649_77/1-1861 a AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/7605-9465 a * END HIT-NUMBER=2.2 HIT-NAME=AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.] HIT-ACCESSION=AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.] HIT-ROW-SCORE=3642 HIT-BITS=3642 HIT-GAPS=0 HIT-EVALUE=0.0 HIT-PERCENT-IDENTITY=98.8179669030733 ALLIGNMENT=START CLUSTAL W(1.81) multiple sequence alignment 3_649_77/1439-1861 tggatgggttaatttactccaagaaaagacaggaaatccttgatctgtgggtctatcaca AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/1-423 tggatgggttaatttactccaagaaaagacaggaaatccttgatctgtgggtctatcaca ************************************************************ 3_649_77/1439-1861 cacaaggctccttccctgattggcagaattataccccagggccagggattagattcccgc AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/1-423 cacaaggctccttccctgattggcagaattataccccagggccagggattagattcccac ********************************************************** * 3_649_77/1439-1861 taacatttggatggtgctacaagctagtaccagtcgacccagaggaagtagaagaggcca AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/1-423 taacatttgggtggtgctacaagctagtaccagtcgacccaaaggaagtagaagaggcca ********** ****************************** ****************** 3_649_77/1439-1861 cagagggagagaacaacagcctattacaccctatatgccagcacggaaaggatgatgagg AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/1-423 cagagggagagaacaacagcctattacaccctatatgccaacacggaatggatgatgagg **************************************** ******* *********** 3_649_77/1439-1861 aaaaagaagtgttaatgtggaagtttgacagtcgcctggctctaacacacagagcccgag AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/1-423 aaaaagaagtgttaatgtggaagtttgacagtcgcctggctctaacacacagagcccgag ************************************************************ 3_649_77/1439-1861 agctgcatccggagttctacaaagactgctgacacagactgctgacgtgaagttgctgac AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/1-423 agctgcatccggagttctacaaagactgctgacacagactgctgacgtgaagttgctgac ************************************************************ 3_649_77/1439-1861 agggactttccgcggggactttccaggggaggtgtgatttgggcggagttggggagtggc AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/1-423 agggactttccgcggggactttccaggggaggtgtgatttgggcggagttggggagtggc ************************************************************ 3_649_77/1439-1861 taa AF414006[HIV-1_isolate_98BY10443_from_Belarus,_complete_genome.]/1-423 taa *** END HIT-NUMBER=3.1 HIT-NAME=AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.] HIT-ACCESSION=AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.] HIT-ROW-SCORE=3420 HIT-BITS=3420 HIT-GAPS=0 HIT-EVALUE=0.0 HIT-PERCENT-IDENTITY=98.1730252552391 ALLIGNMENT=START CLUSTAL W(1.81) multiple sequence alignment 3_649_77/1-1861 gggacaattggagaagtgaattatataagtataaagtagtaaaaattgaaccattaggag AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 gggacaattggagaagtgaattatataaatataaagtagtaaaaattgaaccattaggag **************************** ******************************* 3_649_77/1-1861 tagcacccaccaaggcaaagagaagagtggtgcagagagagaaaagagcagtgggaatag AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 tagcacccaccaaggcaaagagaagagtggtgcagagagagaaaagagcagtgggaatag ************************************************************ 3_649_77/1-1861 gagctgtgttccttgggttcttgggagcagcaggaagcactatgagcgcggcgtcaatca AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 gagctgtgttccttgggttcttgggagcagcaggaagcactatgggcgcggcgtcaataa ******************************************** ************* * 3_649_77/1-1861 cgctgacggtacaggccagacaattattgcctggtatagtgcaacagcagaataatctgc AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 cgctgacggtacaggccagacaattattgtctggtatagtgcaacagcagaataatctgc ***************************** ****************************** 3_649_77/1-1861 tgagggctattgaggcgcaacaacatctgttgcaactcacagtctggggcatcaagcagc AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 tgagggctattgaggcgcaacaacatctgttgcaactcacagtctggggcatcaagcagc ************************************************************ 3_649_77/1-1861 tccaggcgagagtcctggctgtggagagatacctaaaggatcaacagctcctggggattt AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 tccaggcgagagtcctggctgtggagagatacctaaaggatcaacagctcctggggattt ************************************************************ 3_649_77/1-1861 ggggttgctctggaaaactcatttgcaccactgctgtgccttggaatactagttggagta AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 ggggttgctctggaaaactcatttgcaccactgctgtgccttggaatactagttggagta ************************************************************ 3_649_77/1-1861 ataaatctctagatgacatttggaataacatgacctggatggagtgggaaagagaaatta AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 ataaatctctagataagatttggaataacatgacctggatggagtgggaaagagaaatta ************** * ******************************************* 3_649_77/1-1861 ataattacacaggtttaatatacactttaatagaagaatcgcagaaccaacaagaaaaga AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 ataattacacaggtttaatatacaatttaatagaagaatcgcagaaccaacaagaaaaga ************************ *********************************** 3_649_77/1-1861 atgaacaagaattattggcattagataaatgggcaagtttgtggaattggtttgacatat AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 atgaacaagaactattggcattagataaatgggcaagtttgtggaattggtttgacatat *********** ************************************************ 3_649_77/1-1861 caaactggctgtggtatataaaaatattcataatgatagtaggaggcttggtaggtttaa AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 caaaatggctgtggtatataaaaatattcataatgatagtaggaggcttggtaggtttaa **** ******************************************************* 3_649_77/1-1861 gaataatttttgctgtactttctctagtgaatagagttaggcagggatattcaccattat AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 gaataatttttgctgtactttctatagtgaatagagttaggcagggatattcaccattat *********************** ************************************ 3_649_77/1-1861 catttcagacccgcctcccaacccagaggggacccgacaggcccgaaggaatagaagaag AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 catttcagacccgcctcccaacccagaggggacccgacaggcccgaaggaatagaagaag ************************************************************ 3_649_77/1-1861 aaggtggaaagagagacagagacacatccattcgattagtgaacggattcttagcactta AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 aaggtggagagagagacagagacacatccattcgattagtcaacggattcttagcactta ******** ******************************* ******************* 3_649_77/1-1861 tctgggacgacctgaggagcctgtgcctctgcatctaccaccacttgagagacttactct AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 tctgggacgacctgaggagcctgtgcctcttcatctaccaccacttgagagacttactct ****************************** ***************************** 3_649_77/1-1861 tgattgcagcgaggattgtggaacttctgggacacagggggtgggaagccctcaaatatt AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 tgattgcagcgaggactgtggaacttctgggacgcagggggtgggaagccctcaaatatt *************** ***************** ************************** 3_649_77/1-1861 ggtggaatcttctacagtattggattcaggaactaaagagtagtgctattaatctgataa AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 ggtggaatctcctacagtattggattcaggaactaaagagtagtgctattaatctgataa ********** ************************************************* 3_649_77/1-1861 ataccatagcaatagcagtagctgggtggacagatagggttatagaaataggacaaagat AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 ataccatagcaatagcagtagctgggtggacagatagggttatagaaataggacaaagat ************************************************************ 3_649_77/1-1861 tttgtagagctatacgtaacatacctaggagaatcagacagggcgcagaaaaggctttgc AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 tttgtagagctattcgtaacatacctaggagaatcagacagggcgcagaaaaggctttgc ************* ********************************************** 3_649_77/1-1861 aataacatggggggcaaatggtcaaaaagtagcatagtgggatggcctcaggttagggaa AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 aataacatggggggcaaatggtcaaaaagtagcatagtgggatggcctcagattagggaa *************************************************** ******** 3_649_77/1-1861 agaataagacgagctcctgctccagcagcaagaggagtaggaccagtatctcaagatttg AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 agaatacgacgagctcctgctccagcagcaagaggagtaggaccagtatctcaagatttg ****** ***************************************************** 3_649_77/1-1861 gataagtatggagcagtcacaagcagtaatacagcagctactaatgctgattgcgcctgg AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 gataagtatggagcagtcacaagcagtaacacagcagctaacaatgctgactgcgcctgg ***************************** ********** ******** ********* 3_649_77/1-1861 ctggaggcgcaaaaggaagaggaggtaggctttccagtcaggccgcaggtacctgtgaga AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 ctggaggcgcaaaaggaagaggaggtaggctttccagtcaggccgcaggtacctttgaga ****************************************************** ***** 3_649_77/1-1861 ccgatgacatataaggcagctttcgatctcagccactttttaaaagaaaaggggggactg AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 ccgatgacatataagggagctttcgatctcagccactttttaaaagaaaaggggggactg **************** ******************************************* 3_649_77/1-1861 gatgggttaatttactccaagaaaagacaggaaatccttgatctgtgggtctatcacaca AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 gatgggttaatttactccaagaaaagacaagaaatccttgatctgtgggtctatcacaca ***************************** ****************************** 3_649_77/1-1861 caaggctccttccctgattggcagaattataccccagggccagggattagattcccgcta AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 caaggctacttccctgattggcagaattataccccagggccagggattagattcccacta ******* ************************************************ *** 3_649_77/1-1861 acatttggatggtgctacaagctagtaccagtcgacccagaggaagtagaagaggccaca AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 acatttgggtggtgctacaagctagtaccagtcgacccagatgaagtagaagaggccaca ******** ******************************** ****************** 3_649_77/1-1861 gagggagagaacaacagcctattacaccctatatgccagcacggaaaggatgatgaggaa AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 gagggagagaacaacagcctattacaccctatatgccaacacggaatggatgatgaggaa ************************************** ******* ************* 3_649_77/1-1861 aaagaagtgttaatgtggaagtttgacagtcgcctggctctaacacacagagcccgagag AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 aaagaagtgttaatgtggaagtttgacagtcgcctggctctaacacacagagcccgagag ************************************************************ 3_649_77/1-1861 ctgcatccggagttctacaaagactgctgacacagactgctgacgtgaagttgctgacag AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 ctgcatccggagttctacaaagactgctgacacagactgctgacatgaagttgctgacag ******************************************** *************** 3_649_77/1-1861 ggactttccgcggggactttccaggggaggtgtgatttgggcggagttggggagtggcta AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 ggactttccgcggggactttccaggggaggtgtggtttgggcggagttggggagtggcta ********************************** ************************* 3_649_77/1-1861 a AF193277[HIV-1_isolate_RU98001_from_Russia,_complete_genome.]/6966-8826 a * END HIT-NUMBER=4.1 HIT-NAME=AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.] HIT-ACCESSION=AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.] HIT-ROW-SCORE=2767 HIT-BITS=2767 HIT-GAPS=0 HIT-EVALUE=0.0 HIT-PERCENT-IDENTITY=97.9002624671916 ALLIGNMENT=START CLUSTAL W(1.81) multiple sequence alignment 3_649_77/1-1524 gggacaattggagaagtgaattatataagtataaagtagtaaaaattgaaccattaggag AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 gggacaattggagaagtgaattatataaatataaagtagttaaaattgaaccattaggag **************************** *********** ******************* 3_649_77/1-1524 tagcacccaccaaggcaaagagaagagtggtgcagagagagaaaagagcagtgggaatag AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 tagcacccaccagggcaaagagaagagtggtgcagagagagaaaagagcagtgggaatag ************ *********************************************** 3_649_77/1-1524 gagctgtgttccttgggttcttgggagcagcaggaagcactatgagcgcggcgtcaatca AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 gagctgtgttccttgggttcttgggagcagcaggaagcactatgggcgcggcgtcaataa ******************************************** ************* * 3_649_77/1-1524 cgctgacggtacaggccagacaattattgcctggtatagtgcaacagcagaataatctgc AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 cgctgacggtacaggccagacaattattgtctggtatagtgcaacagcagaataatctgc ***************************** ****************************** 3_649_77/1-1524 tgagggctattgaggcgcaacaacatctgttgcaactcacagtctggggcatcaagcagc AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 tgagggctattgaggcgcaacaacatctgttgcaactcacagtctggggcatcaagcagc ************************************************************ 3_649_77/1-1524 tccaggcgagagtcctggctgtggagagatacctaaaggatcaacagctcctggggattt AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 tccaggcgagagtcctggctgtggagagatacctaaaggatcaacagctcctggggattt ************************************************************ 3_649_77/1-1524 ggggttgctctggaaaactcatttgcaccactgctgtgccttggaatactagttggagta AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 ggggttgctctggaaaactcatttgcaccactgctgtgccttggaatactagttggagta ************************************************************ 3_649_77/1-1524 ataaatctctagatgacatttggaataacatgacctggatggagtgggaaagagaaatta AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 ataaacctctagatgagatttgaaataacatgacctggatggagtgggaaagagaaatta ***** ********** ***** ************************************* 3_649_77/1-1524 ataattacacaggtttaatatacactttaatagaagaatcgcagaaccaacaagaaaaga AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 ataattacacaggtttaatatacaatttaatagaagaatcgcagaaccaacaagaaaaga ************************ *********************************** 3_649_77/1-1524 atgaacaagaattattggcattagataaatgggcaagtttgtggaattggtttgacatat AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 atgaacaagaaatattggcattagataaatgggcaagtttgtggaattggtttgacatat *********** ************************************************ 3_649_77/1-1524 caaactggctgtggtatataaaaatattcataatgatagtaggaggcttggtaggtttaa AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 caaaatggctgtggtatataaaaatattcataatgatagtaggaggcttggtaggtttaa **** ******************************************************* 3_649_77/1-1524 gaataatttttgctgtactttctctagtgaatagagttaggcagggatattcaccattat AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 gaataatttttgctgtactttctatagtgaatagaggtaggcagggatattcaccattat *********************** ************ *********************** 3_649_77/1-1524 catttcagacccgcctcccaacccagaggggacccgacaggcccgaaggaatagaagaag AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 catttcagacccgcctcccagcccagaggggacccgacaggcccgaaggaatagaagaag ******************** *************************************** 3_649_77/1-1524 aaggtggaaagagagacagagacacatccattcgattagtgaacggattcttagcactta AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 aagatggagagagagacagagacacatccattcgattagtgaacagattcttagcactta *** **** *********************************** *************** 3_649_77/1-1524 tctgggacgacctgaggagcctgtgcctctgcatctaccaccacttgagagacttactct AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 tctgggacgacctgaggagcctgtgcttcttcatctaccaccacttgagagacttactct ************************** *** ***************************** 3_649_77/1-1524 tgattgcagcgaggattgtggaacttctgggacacagggggtgggaagccctcaaatatt AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 tgattgcagcgaggattgtggaacttctgggacgcagggggtgggaagccctcaaatatt ********************************* ************************** 3_649_77/1-1524 ggtggaatcttctacagtattggattcaggaactaaagagtagtgctattaatctgataa AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 ggtggaatctcctacagtattggattcaggaactaaagagtagtgctattaatctgatag ********** ************************************************ 3_649_77/1-1524 ataccatagcaatagcagtagctgggtggacagatagggttatagaaataggacaaagat AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 gtaccatagcaatagcagtagctgggtggacagatagggttatagaaataggacaaagat *********************************************************** 3_649_77/1-1524 tttgtagagctatacgtaacatacctaggagaatcagacagggcgcagaaaaggctttgc AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 tttgtagagctatgcgtaacatacctaggagaatcagacagggcgcagaaaaggctttgc ************* ********************************************** 3_649_77/1-1524 aataacatggggggcaaatggtcaaaaagtagcatagtgggatggcctcaggttagggaa AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 aataacatggggggcaaatggtcaaaaagtagcatagtgggatggcctcaggttagggaa ************************************************************ 3_649_77/1-1524 agaataagacgagctcctgctccagcagcaagaggagtaggaccagtatctcaagatttg AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 agaataagacgagctcctgctccagcggcaagaggagtaggaccagtatctcaagatttg ************************** ********************************* 3_649_77/1-1524 gataagtatggagcagtcacaagcagtaatacagcagctactaatgctgattgcgcctgg AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 gataagtatggagcagtcacaagcagtaatacagcagctaataatgctgattgcgcctgg **************************************** ******************* 3_649_77/1-1524 ctggaggcgcaaaaggaagaggaggtaggctttccagtcaggccgcaggtacctgtgaga AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 ctggaggcgcaagaggaagaggaggtaggctttccagtcaggccgcaggtacctttgaga ************ ***************************************** ***** 3_649_77/1-1524 ccgatgacatataaggcagctttcgatctcagccactttttaaaagaaaaggggggactg AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 ccgatgacatataagggagctttcgatctcagccactttttaaaagaaaaggggggactg **************** ******************************************* 3_649_77/1-1524 gatgggttaatttactccaagaaaagacaggaaatccttgatctgtgggtctatcacaca AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 gatgggttaatttactccaagaaaagacaagaaatccttgatctgtgggtctatcacaca ***************************** ****************************** 3_649_77/1-1524 caaggctccttccctgattggcag AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/6828-8351 caaggctacttccctgattggcag ******* **************** END HIT-NUMBER=4.2 HIT-NAME=AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.] HIT-ACCESSION=AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.] HIT-ROW-SCORE=2767 HIT-BITS=2767 HIT-GAPS=0 HIT-EVALUE=1e-162 HIT-PERCENT-IDENTITY=97.5232198142415 ALLIGNMENT=START CLUSTAL W(1.81) multiple sequence alignment 3_649_77/1539-1861 gccagggattagattcccgctaacatttggatggtgctacaagctagtaccagtcgaccc AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/8351-8673 gccagggattagattcccactaacatttgggtggtgctacaagctagtaccagtcgaccc ****************** *********** ***************************** 3_649_77/1539-1861 agaggaagtagaagaggccacagagggagagaacaacagcctattacaccctatatgcca AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/8351-8673 agctgaagtagaagaggccacagagggagagaacaacagcctattacaccctatatgcca ** ******************************************************** 3_649_77/1539-1861 gcacggaaaggatgatgaggaaaaagaagtgttaatgtggaagtttgacagtcgcctggc AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/8351-8673 acacggaatggatgatgaggaaaaagaagtgttaatgtggaagtttgacagtcgcctggc ******* *************************************************** 3_649_77/1539-1861 tctaacacacagagcccgagagctgcatccggagttctacaaagactgctgacacagact AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/8351-8673 tctaacacacagagcccgagagctgcatccggagttctacaaagactgctgacacagact ************************************************************ 3_649_77/1539-1861 gctgacgtgaagttgctgacagggactttccgcggggactttccaggggaggtgtgattt AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/8351-8673 gctgacatgaagttgctgacagggactttccgcggggactttccaggggaggtgtggttt ****** ************************************************* *** 3_649_77/1539-1861 gggcggagttggggagtggctaa AF193276[HIV-1_isolate_KAL153_from_Russia,_complete_genome.]/8351-8673 gggcggagttggggagtggctaa *********************** END HIT-NUMBER=5.1 HIT-NAME=AF082485[HIV-1_isolate_KAL68.1_from_Russia, HIT-ACCESSION=AF082485[HIV-1_isolate_KAL68.1_from_Russia, HIT-ROW-SCORE=2482 HIT-BITS=2482 HIT-GAPS=0 HIT-EVALUE=0.0 HIT-PERCENT-IDENTITY=98.2195845697329 ALLIGNMENT=START CLUSTAL W(1.81) multiple sequence alignment 3_649_77/1-1348 gggacaattggagaagtgaattatataagtataaagtagtaaaaattgaaccattaggag AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 gggacaattggagaagtgaattatataaatataaagtagtaaaaattgaaccattaggag **************************** ******************************* 3_649_77/1-1348 tagcacccaccaaggcaaagagaagagtggtgcagagagagaaaagagcagtgggaatag AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 tagcgcccaccagggcaaagagaagagtggtgcagagagagaaaagagcagtgggaatag **** ******* *********************************************** 3_649_77/1-1348 gagctgtgttccttgggttcttgggagcagcaggaagcactatgagcgcggcgtcaatca AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 gagctgtgttccttgggttcttgggagcagcaggaagcactatgggcgcggcgtcaataa ******************************************** ************* * 3_649_77/1-1348 cgctgacggtacaggccagacaattattgcctggtatagtgcaacagcagaataatctgc AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 cgctgacggtacaggccagacaattattgtctggtatagtgcaacagcagaataatctgc ***************************** ****************************** 3_649_77/1-1348 tgagggctattgaggcgcaacaacatctgttgcaactcacagtctggggcatcaagcagc AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 tgagggctattgaggcgcaacaacatctgttgcaactcacagtctggggcatcaagcagc ************************************************************ 3_649_77/1-1348 tccaggcgagagtcctggctgtggagagatacctaaaggatcaacagctcctggggattt AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 tccaggcgagagtcctggctgcggagagatacctaaaggatcaacagctcctggggattt ********************* ************************************** 3_649_77/1-1348 ggggttgctctggaaaactcatttgcaccactgctgtgccttggaatactagttggagta AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 ggggttgctctggaaaactcatttgcaccactgctgtgccttggaatactagttggagta ************************************************************ 3_649_77/1-1348 ataaatctctagatgacatttggaataacatgacctggatggagtgggaaagagaaatta AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 ataaacctctagatgagatttggaataacatgacctggatggagtgggaaagagaaatta ***** ********** ******************************************* 3_649_77/1-1348 ataattacacaggtttaatatacactttaatagaagaatcgcagaaccaacaagaaaaga AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 ataattacacaggtttaatatacaatttaatagaagaatcgcagaaccaacaagaaaaga ************************ *********************************** 3_649_77/1-1348 atgaacaagaattattggcattagataaatgggcaagtttgtggaattggtttgacatat AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 atgaacaagaaatattggcattagataaatgggcaagtttgtggagttggtttgacatat *********** ********************************* ************** 3_649_77/1-1348 caaactggctgtggtatataaaaatattcataatgatagtaggaggcttggtaggtttaa AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 caaaatggctgtggtatataaaaatattcataatgatagtaggaggcttggtaggtttaa **** ******************************************************* 3_649_77/1-1348 gaataatttttgctgtactttctctagtgaatagagttaggcagggatattcaccattat AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 gaataatttttgctgtactttctatagtgaatagagttaggcagggatattcaccattat *********************** ************************************ 3_649_77/1-1348 catttcagacccgcctcccaacccagaggggacccgacaggcccgaaggaatagaagaag AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 catttcagacccgcctcccaacccagaggggacccgacaggcccgaaggaatagaagaag ************************************************************ 3_649_77/1-1348 aaggtggaaagagagacagagacacatccattcgattagtgaacggattcttagcactta AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 aaggtggagagagagacagagacacatccattcgattagtgaacagattcttagcactta ******** *********************************** *************** 3_649_77/1-1348 tctgggacgacctgaggagcctgtgcctctgcatctaccaccacttgagagacttactct AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 tctgggacgacctgaggagcctgtgcctcttcatctaccaccacttgagagacttactct ****************************** ***************************** 3_649_77/1-1348 tgattgcagcgaggattgtggaacttctgggacacagggggtgggaagccctcaaatatt AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 tgattgcagcgaggattgtggaacttctgggacgcagggggtgggaagccctcaaatatt ********************************* ************************** 3_649_77/1-1348 ggtggaatcttctacagtattggattcaggaactaaagagtagtgctattaatctgataa AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 ggtggaatctcctacagtattggattcaggaactaaagagtagtgctattaatctgatag ********** ************************************************ 3_649_77/1-1348 ataccatagcaatagcagtagctgggtggacagatagggttatagaaataggacaaagat AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 gtaccatagcaatagcagtagctgggtggacagatagggttatagaaataggacaaagat *********************************************************** 3_649_77/1-1348 tttgtagagctatacgtaacatacctaggagaatcagacagggcgcagaaaaggctttgc AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 tttgtagagctattcgtaacatacctaggagaatcagacagggcgcagaaaaggctttgc ************* ********************************************** 3_649_77/1-1348 aataacatggggggcaaatggtcaaaaagtagcatagtgggatggcctcaggttagggaa AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 aataacatggggggcaaatggtcaaaaagtagcatagtgggatggcctcaggttagggaa ************************************************************ 3_649_77/1-1348 agaataagacgagctcctgctccagcagcaagaggagtaggaccagtatctcaagatttg AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 agaataagacgagctcctgctccagcagcaagaggagtaggaccagtatctcaagatttg ************************************************************ 3_649_77/1-1348 gataagtatggagcagtcacaagcagtaatacagcagctactaatgctgattgcgcctgg AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 gataagtatggagcagtcacaagcagtaatacagcagctaataatgctgattgcgcctgg **************************************** ******************* 3_649_77/1-1348 ctggaggcgcaaaaggaagaggaggtag AF082485[HIV-1_isolate_KAL68.1_from_Russia,/1645-2992 ctggaggcgcaagaggaagaggaggtag ************ *************** END HIT-NUMBER=6.1 HIT-NAME=AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.] HIT-ACCESSION=AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.] HIT-ROW-SCORE=1929 HIT-BITS=1929 HIT-GAPS=3 HIT-EVALUE=0.0 HIT-PERCENT-IDENTITY=88.7634105025409 ALLIGNMENT=START CLUSTAL W(1.81) multiple sequence alignment 3_649_77/2-1772 ggacaattggagaagtgaattatataagtataaagtagtaaaaattgaaccattaggagt AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 ggacaattggagaagtgaattatataaatataaagtagtacaaattgaaccattaggagt *************************** ************ ******************* 3_649_77/2-1772 agcacccaccaaggcaaagagaagagtggtgcagagagagaaaagagcagtgggaatagg AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 agcacccaccaaggcaaagagaagagtggtgcagagagaaaaaagagcagtgggaatagg *************************************** ******************** 3_649_77/2-1772 agctgtgttccttgggttcttgggagcagcaggaagcactatgagcgcggcgtcaatcac AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 agctgtgttccttgggttcttgggagcagcaggaagcactatgggcgcagcgtcaatgac ******************************************* **** ******** ** 3_649_77/2-1772 gctgacggtacaggccagacaattattgcctggtatagtgcaacagcagaataatctgct AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 gctgacggtacaggccagacaattattgtctggtatagtgcaacagcagaacaatttgct **************************** ********************** *** **** 3_649_77/2-1772 gagggctattgaggcgcaacaacatctgttgcaactcacagtctggggcatcaagcagct AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 gagggctattgaggcgcaacagcatctgttgcaactcacagtctggggcatcaagcagct ********************* ************************************** 3_649_77/2-1772 ccaggcgagagtcctggctgtggagagatacctaaaggatcaacagctcctggggatttg AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 ccaagcaagagtcctggctgtggaaagatacctaagggatcaacagctcctggggatttg *** ** ***************** ********** ************************ 3_649_77/2-1772 gggttgctctggaaaactcatttgcaccactgctgtgccttggaatactagttggagtaa AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 gggttgctctggaaaactcatttgcaccactgctgtgccttggaatactagttggagtaa ************************************************************ 3_649_77/2-1772 taaatctctagatgacatttggaataacatgacctggatggagtgggaaagagaaattaa AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 taaatctctgagtcagatttgggataacatgacctggatgcagtgggaaagggaaattga ********* * * ****** ***************** ********** ****** * 3_649_77/2-1772 taattacacaggtttaatatacactttaatagaagaatcgcagaaccaacaagaaaagaa AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 taattacacaagcttaatatacaatttaattgaagaatcgcaaaaccaacaagaaaagaa ********** * ********** ****** *********** ***************** 3_649_77/2-1772 tgaacaagaattattggcattagataaatgggcaagtttgtggaattggtttgacatatc AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 tgaacaagaattattggaattagataactgggcaagtttgtggaattggtttagcataac ***************** ********* ************************ **** * 3_649_77/2-1772 aaactggctgtggtatataaaaatattcataatgatagtaggaggcttggtaggtttaag AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 aaattggctgtggtatataaaaatattcataatgatagtaggaggcttggtaggtttaag *** ******************************************************** 3_649_77/2-1772 aataatttttgctgtactttctctagtgaatagagttaggcagggatattcaccattatc AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 aatagtttttgctgtactttctatagtgaatagagttaggcagggatactcaccattatc **** ***************** ************************* *********** 3_649_77/2-1772 atttcagacccgcctcccaacccagaggggacccgacaggcccgaaggaatagaagaaga AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 gtttcagacccgcctcccagccaggaggggacccgacaggcccgaaggaatcgaagaaga ****************** ** *************************** ******** 3_649_77/2-1772 aggtggaaagagagacagagacacatccattcgattagtgaacggattcttagcacttat AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 aggtggagagagagacagagacagatccggtcaattagtggatggattcttagcaattat ******* *************** **** ** ******* * ************ **** 3_649_77/2-1772 ctgggacgacctgaggagcctgtgcctctgcatctaccaccacttgagagacttactctt AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 ctgggtcgacctgcggagcctgtgcctcttcagctaccaccgcttgagagacttactctt ***** ******* *************** ** ******** ****************** 3_649_77/2-1772 gattgcagcgaggattgtggaacttctgggacacagggggtgggaagccctcaaatattg AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 gattgtaacgaggattgtggaacttctgggacgcagagggtgggaagccctcaaatattg ***** * ************************ *** *********************** 3_649_77/2-1772 gtggaatcttctacagtattggattcaggaactaaagagtagtgctattaatctgataaa AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 gtggaatctcctacagtattggattcaggaactaaagaatagtgctgttagcttgctcaa ********* **************************** ******* *** ** * ** 3_649_77/2-1772 taccatagcaatagcagtagctgggtggacagatagggttatagaaataggacaaagatt AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 cgccacagctatagcagtagctgaggggactgatagggttatagaagtattacaaagagc *** *** ************* * **** *************** ** ******* 3_649_77/2-1772 ttgtagagctatacgtaacatacctaggagaatcagacagggcgcagaaaaggctttgca AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 ttgtagagctattctccacatacctagaagaataagacagggcttggaaagggctttgca ************ * ********** ***** ********* **** ********* 3_649_77/2-1772 ataacatggggggcaaatggtcaaaaagtagcatagtgggatggcctcaggttagggaaa AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 ataagatgggtggtaagtggtcaaaaagtagtaaaattggatggcctactgtaagggaaa **** ***** ** ** ************** * * * ********* ** ******* 3_649_77/2-1772 gaataagacgagctcctgctccagcagcaagaggagtaggaccagtatctcaagatttgg AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 gaatgagacgag---ctgagccagcagcagatggggtgggagcagtatctcgagacctgg **** ******* *** ********* ** ** *** ********* *** *** 3_649_77/2-1772 ataagtatggagcagtcacaagcagtaatacagcagctactaatgctgattgcgcctggc AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 aaaaacatggagcaatcacaagtagtaatacagcaactaacaatgctgattgtgcctggc * ** ******** ******* ************ *** *********** ******* 3_649_77/2-1772 tggaggcgcaaaaggaagaggaggtaggctttccagtcaggccgcaggtacctgtgagac AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 tagaagcacaagaggaggaggaggtgggttttccagtcagacctcaggtacctctaagac * ** ** *** **** ******** ** *********** ** ********* * **** 3_649_77/2-1772 cgatgacatataaggcagctttcgatctcagccactttttaaaagaaaaggggggactgg AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 caatgacttacaaggcagcgttcgatcttagccactttttaaaagaaaaggggggactgg * ***** ** ******** ******** ******************************* 3_649_77/2-1772 atgggttaatttactccaagaaaagacaggaaatccttgatctgtgggtctatcacacac AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 aagggataatttggtcccagaaaagacaagatatccttgatctgtgggtccaccacacac * *** ****** *** ********** ** ****************** * ******* 3_649_77/2-1772 aaggctccttccctgattggcagaattataccccagggccagggattagattcccgctaa AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 aaggctacttccctgattggcagaactacacaccagggccagggatcagatatccactga ****** ****************** ** ** ************** **** ** ** * 3_649_77/2-1772 catttggatggtgctacaagctagtaccagtcgacccagaggaagtagaagaggccacag AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 cctttggatggtgcttcaagctagtaccagtggagccagagaaggtagaagaggccaatg * ************* *************** ** ****** * ************* * 3_649_77/2-1772 agggagagaacaacagcctattacaccctatatgccagcacggaaaggatgatgaggaaa AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 aaggagagaacaacagattgttacaccctgtgagcctgcatgggatggaggacccggaga * ************** * ********* * *** *** ** * *** ** *** * 3_649_77/2-1772 aagaagtgttaatgtggaagtttgacagtcgcctggctctaacacacagagcccgagagc AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 aagaagtgttagtatggaggtttgacagccgcctagcactccgtcacatggcccgagagc *********** * **** ********* ***** ** ** **** ********** 3_649_77/2-1772 tgcatccggagttctacaaagactgctgaca AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/7678-9445 tacatccggagtactacaagaactgctgaca * ********** ****** ********** END HIT-NUMBER=6.2 HIT-NAME=AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.] HIT-ACCESSION=AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.] HIT-ROW-SCORE=1929 HIT-BITS=1929 HIT-GAPS=3 HIT-EVALUE=1e-49 HIT-PERCENT-IDENTITY=82.6347305389222 ALLIGNMENT=START CLUSTAL W(1.81) multiple sequence alignment 3_649_77/1439-1772 tggatgggttaatttactccaagaaaagacaggaaatccttgatctgtgggtctatcaca AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/1-334 tggaagggataatttggtcccagaaaagacaagatatccttgatctgtgggtccaccaca **** *** ****** *** ********** ** ****************** * **** 3_649_77/1439-1772 cacaaggctccttccctgattggcagaattataccccagggccagggattagattcccgc AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/1-334 cacaaggctacttccctgattggcagaactacacaccagggccagggatcagatatccac ********* ****************** ** ** ************** **** ** * 3_649_77/1439-1772 taacatttggatggtgctacaagctagtaccagtcgacccagaggaagtagaagaggcca AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/1-334 tgacctttggatggtgcttcaagctagtaccagtggagccagagaaggtagaagaggcca * ** ************* *************** ** ****** * ************* 3_649_77/1439-1772 cagagggagagaacaacagcctattacaccctatatgccagcacggaaaggatgatgagg AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/1-334 atgaaggagagaacaacagattgttacaccctgtgagcctgcatgggatggaggacccgg ** ************** * ********* * *** *** ** * *** ** ** 3_649_77/1439-1772 aaaaagaagtgttaatgtggaagtttgacagtcgcctggctctaacacacagagcccgag AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/1-334 agaaagaagtgttagtatggaggtttgacagccgcctagcactccgtcacatggcccgag * ************ * **** ********* ***** ** ** **** ******* 3_649_77/1439-1772 agctgcatccggagttctacaaagactgctgaca AF256206[HIV-1_clone_S61G1_from_Spain,_complete_genome.]/1-334 agctacatccggagtactacaagaactgctgaca **** ********** ****** ********** END HIT-NUMBER=7.1 HIT-NAME=U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1, HIT-ACCESSION=U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1, HIT-ROW-SCORE=1923 HIT-BITS=1923 HIT-GAPS=8 HIT-EVALUE=0.0 HIT-PERCENT-IDENTITY=88.7133182844244 ALLIGNMENT=START CLUSTAL W(1.81) multiple sequence alignment 3_649_77/6-1772 aattggagaagtgaattatataagtataaagtagtaaaaattgaaccattaggagtagca U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 aattggagaagtgaattatataaatataaagtagtaaaaattgaaccattaggagtagca *********************** ************************************ 3_649_77/6-1772 cccaccaaggcaaagagaagagtggtgcagagagagaaaagagcagtgggaataggagct U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 cccaccagggcaaagagaagagtggtgcagagagaaaaaagagcagtgggaataggagcg ******* *************************** *********************** 3_649_77/6-1772 gtgttccttgggttcttgggagcagcaggaagcactatgagcgcggcgtcaatcacgctg U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 ttgttccttgggttcttgggagcagcaggaagcactatgggcgcagcgtcaataacgctg ************************************** **** ******** ****** 3_649_77/6-1772 acggtacaggccagacaattattgcctggtatagtgcaacagcagaataatctgctgagg U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 acggtacaggccagacaattattgtctggtatagtgcaacagcagaacaatttgctgagg ************************ ********************** *** ******** 3_649_77/6-1772 gctattgaggcgcaacaacatctgttgcaactcacagtctggggcatcaagcagctccag U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 gctattgaggcgcaacagcatctgttgcaactcacagtctggggcatcaagcagctccag ***************** ****************************************** 3_649_77/6-1772 gcgagagtcctggctgtggagagatacctaaaggatcaacagctcctggggatttggggt U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 gcaagagtcctggctgtggaaagatacctaaaggatcaacagctcctggggatttggggt ** ***************** *************************************** 3_649_77/6-1772 tgctctggaaaactcatttgcaccactgctgtgccttggaatactagttggagtaataaa U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 tgctctggaaaactcatctgcaccactgctgtgccttggaatgctagttggagtaataaa ***************** ************************ ***************** 3_649_77/6-1772 tctctagatgacatttggaataacatgacctggatggagtgggaaagagaaattaataat U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 tctctggataagatttggaataacatgacctggatggagtgggacagagaagttagcaat ***** *** * ******************************** ****** *** *** 3_649_77/6-1772 tacacaggtttaatatacactttaatagaagaatcgcagaaccaacaagaaaagaatgaa U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 tacacaagcttgatatacaccttaattgaagaatcgcaaaaccaacaagaaaagaatgaa ****** * ** ******** ***** *********** ********************* 3_649_77/6-1772 caagaattattggcattagataaatgggcaagtttgtggaattggtttgacatatcaaac U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 caagaattattggaattagataaatgggcaagtttgtggaattggtttgacataacaaaa ************* **************************************** **** 3_649_77/6-1772 tggctgtggtatataaaaatattcataatgatagtaggaggcttggtaggtttaagaata U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 tggctgtggtatataaaaatattcataatgatagtaggaggcttggtaggtttaagaata ************************************************************ 3_649_77/6-1772 atttttgctgtactttctctagtgaatagagttaggcagggatattcaccattatcattt U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 atttttgctgtactttctatagtgaatagagttaggcagggatactcaccattatcgttt ****************** ************************* *********** *** 3_649_77/6-1772 cagacccgcctcccaacccagaggggacccgacaggcccgaaggaatagaagaagaaggt U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 cagacccgcctcccagccccgaggggacccgacaggcccgaaggaatcgaagaagaaggt *************** *** *************************** ************ 3_649_77/6-1772 ggaaagagagacagagacacatccattcgattagtgaacggattcttagcacttatctgg U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 ggagagagagacagagacagatccggtcgattagtgaacggattcttagcacttatctgg *** *************** **** ********************************** 3_649_77/6-1772 gacgacctgaggagcctgtgcctctgcatctaccaccacttgagagacttactcttgatt U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 gacgatctgcggagcctgtgcctcttcagctaccaccgcttgagagacttactcttgatt ***** *** *************** ** ******** ********************** 3_649_77/6-1772 gcagcgaggattgtggaacttctgggacacagggggtgggaagccctcaaatattggtgg U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 gtgacgaggattgtggaacttctgggacgcagggggtgggaagtcctcaaatattggtgg * ************************ ************** **************** 3_649_77/6-1772 aatcttctacagtattggattcaggaactaaagagtagtgctattaatctgataaatacc U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 aatctcctgcagtattggagtcaggaactaaagaatagtgctgttagtttgcttaatgcc ***** ** ********** ************** ******* *** * ** * *** ** 3_649_77/6-1772 atagcaatagcagtagctgggtggacagatagggttatagaaataggacaaagattttgt U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 acagctatagcagtagctgaggggacagatagggttatagaagtagtgcaaagagcttgt * *** ************* * ******************** *** ****** **** 3_649_77/6-1772 agagctatacgtaacatacctaggagaatcagacagggcgcagaaaaggctttgcaataa U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 agagctgttctccacatacctgtaagaataagacagggtctggaaagggctttgctataa ****** * * ******** ***** ******** **** ******** **** 3_649_77/6-1772 -----catggggggcaaatggtcaaaaagtagcatagtgggatggcctcaggttagggaa U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 agcagcatgggtggcaagtggtcaaaaagtagtgtggttggatggcctgctataagggaa ****** ***** ************** * ** ********* * ****** 3_649_77/6-1772 agaataagacgagctcctgctccagcagcaagaggagtaggaccagtatctcaagatttg U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 agaatgaaacgag---ctgagccagcagcagatggggtgggagcagtatctcgagacctg ***** * ***** *** ********* ** ** *** ********* *** ** 3_649_77/6-1772 gataagtatggagcagtcacaagcagtaatacagcagctactaatgctgattgcgcctgg U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 gaaaagcatggagcaatcacaagtagcaatacagcagctactaatgctgattgtgcctgg ** *** ******** ******* ** ************************** ****** 3_649_77/6-1772 ctggaggcgcaaaaggaagaggaggtaggctttccagtcaggccgcaggtacctgtgaga U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 ctagaagcacaagaggatgaagaggtgggttttccagtcaaacctcaggtacctttaaga ** ** ** *** **** ** ***** ** ********** ** ********* * *** 3_649_77/6-1772 ccgatgacatataaggcagctttcgatctcagccactttttaaaagaaaaggggggactg U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 ccaatgacttacaagggagctttagatcttagccactttttaaaagaaaaggggggactg ** ***** ** **** ****** ***** ****************************** 3_649_77/6-1772 gatgggttaatttactccaagaaaagacaggaaatccttgatctgtgggtctatcacaca U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 gaagggctaatttactcccaaagaagacaagatatccttgatctgtggatctaccacaca ** *** *********** * * ****** ** *************** **** ****** 3_649_77/6-1772 caaggctccttccctgattggcagaattataccccagggccagggattagattcccgcta U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 caaggctacttccctgattggcagaactacacaccagggccagggatcaggtatccactg ******* ****************** ** ** ************** ** * ** ** 3_649_77/6-1772 acatttggatggtgctacaagctagtaccagtcgacccagaggaagtagaagaggccaca U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 acctttggatggtgcttcaagctagtaccagttgagcaagagaagatagaagaggccaat ** ************* *************** ** * **** * ************ 3_649_77/6-1772 gagggagagaacaacagcctattacaccctatatgccagcacggaaaggatgatgaggaa U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 gaaggagagaacaacagcttgttacaccctatgagccagcatgggatggacgacccggag ** *************** * *********** ******* ** * *** ** *** 3_649_77/6-1772 aaagaagtgttaatgtggaagtttgacagtcgcctggctctaacacacagagcccgagag U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 agagaagtgttagagtggaggtttgacagtcgcctagcatttcatcacatggcccgagag * ********** ***** *************** ** * **** ********* 3_649_77/6-1772 ctgcatccggagttctacaaagactgctgaca U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/7660-9428 ctgcatccggagtactacaaggactgctgaca ************* ****** *********** END HIT-NUMBER=7.2 HIT-NAME=U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1, HIT-ACCESSION=U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1, HIT-ROW-SCORE=1923 HIT-BITS=1923 HIT-GAPS=8 HIT-EVALUE=5e-52 HIT-PERCENT-IDENTITY=82.934131736527 ALLIGNMENT=START CLUSTAL W(1.81) multiple sequence alignment 3_649_77/1439-1772 tggatgggttaatttactccaagaaaagacaggaaatccttgatctgtgggtctatcaca U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/1-334 tggaagggctaatttactcccaaagaagacaagatatccttgatctgtggatctaccaca **** *** *********** * * ****** ** *************** **** **** 3_649_77/1439-1772 cacaaggctccttccctgattggcagaattataccccagggccagggattagattcccgc U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/1-334 cacaaggctacttccctgattggcagaactacacaccagggccagggatcaggtatccac ********* ****************** ** ** ************** ** * ** * 3_649_77/1439-1772 taacatttggatggtgctacaagctagtaccagtcgacccagaggaagtagaagaggcca U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/1-334 tgacctttggatggtgcttcaagctagtaccagttgagcaagagaagatagaagaggcca * ** ************* *************** ** * **** * ************ 3_649_77/1439-1772 cagagggagagaacaacagcctattacaccctatatgccagcacggaaaggatgatgagg U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/1-334 atgaaggagagaacaacagcttgttacaccctatgagccagcatgggatggacgacccgg ** *************** * *********** ******* ** * *** ** ** 3_649_77/1439-1772 aaaaagaagtgttaatgtggaagtttgacagtcgcctggctctaacacacagagcccgag U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/1-334 agagagaagtgttagagtggaggtttgacagtcgcctagcatttcatcacatggcccgag * * ********** ***** *************** ** * **** ******* 3_649_77/1439-1772 agctgcatccggagttctacaaagactgctgaca U34604[Human_immunodeficiency_virus_HIV-1,_clone_ACH320.2A.2.1,/1-334 agctgcatccggagtactacaaggactgctgaca *************** ****** *********** END HIT-NUMBER=8.1 HIT-NAME=K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU, HIT-ACCESSION=K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU, HIT-ROW-SCORE=1915 HIT-BITS=1915 HIT-GAPS=3 HIT-EVALUE=0.0 HIT-PERCENT-IDENTITY=88.6568848758465 ALLIGNMENT=START CLUSTAL W(1.81) multiple sequence alignment 3_649_77/1-1772 gggacaattggagaagtgaattatataagtataaagtagtaaaaattgaaccattaggag K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 gggacaattggagaagtgaattatataaatataaagtagtaaaaattgaaccattaggag **************************** ******************************* 3_649_77/1-1772 tagcacccaccaaggcaaagagaagagtggtgcagagagagaaaagagcagtgggaatag K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 tagcacccaccaaggcaaagagaagagtggtgcagagagaaaaaagagcagtgggaatag **************************************** ******************* 3_649_77/1-1772 gagctgtgttccttgggttcttgggagcagcaggaagcactatgagcgcggcgtcaatca K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 gagctttgttccttgggttcttgggagcagcaggaagcactatgggcgcacggtcaatga ***** ************************************** **** ****** * 3_649_77/1-1772 cgctgacggtacaggccagacaattattgcctggtatagtgcaacagcagaataatctgc K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 cgctgacggtacaggccagacaattattgtctggtatagtgcagcagcagaacaatttgc ***************************** ************* ******** *** *** 3_649_77/1-1772 tgagggctattgaggcgcaacaacatctgttgcaactcacagtctggggcatcaagcagc K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 tgagggctattgaggcgcaacagcatctgttgcaactcacagtctggggcatcaagcagc ********************** ************************************* 3_649_77/1-1772 tccaggcgagagtcctggctgtggagagatacctaaaggatcaacagctcctggggattt K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 tccaggcaagaatcctggctgtggaaagatacctaaaggatcaacagctcctggggattt ******* *** ************* ********************************** 3_649_77/1-1772 ggggttgctctggaaaactcatttgcaccactgctgtgccttggaatactagttggagta K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 ggggttgctctggaaaactcatttgcaccactgctgtgccttggaatgctagttggagta *********************************************** ************ 3_649_77/1-1772 ataaatctctagatgacatttggaataacatgacctggatggagtgggaaagagaaatta K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 ataaatctctggaacagatttggaataacatgacctggatggagtgggacagagaaatta ********** ** * ******************************** ********** 3_649_77/1-1772 ataattacacaggtttaatatacactttaatagaagaatcgcagaaccaacaagaaaaga K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 acaattacacaagcttaatacattccttaattgaagaatcgcaaaaccagcaagaaaaga * ********* * ****** * * ***** *********** ***** ********** 3_649_77/1-1772 atgaacaagaattattggcattagataaatgggcaagtttgtggaattggtttgacatat K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 atgaacaagaattattggaattagataaatgggcaagtttgtggaattggtttaacataa ****************** ********************************** ***** 3_649_77/1-1772 caaactggctgtggtatataaaaatattcataatgatagtaggaggcttggtaggtttaa K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 caaattggctgtggtatataaaaatattcataatgatagtaggaggcttggtaggtttaa **** ******************************************************* 3_649_77/1-1772 gaataatttttgctgtactttctctagtgaatagagttaggcagggatattcaccattat K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 gaatagtttttgctgtactttctatagtgaatagagttaggcagggatattcaccattat ***** ***************** ************************************ 3_649_77/1-1772 catttcagacccgcctcccaacccagaggggacccgacaggcccgaaggaatagaagaag K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 cgtttcagacccacctcccaaccccgaggggacccgacaggcccgaaggaatagaagaag * ********** *********** *********************************** 3_649_77/1-1772 aaggtggaaagagagacagagacacatccattcgattagtgaacggattcttagcactta K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 aaggtggagagagagacagagacagatccattcgattagtgaacggatccttagcactta ******** *************** *********************** *********** 3_649_77/1-1772 tctgggacgacctgaggagcctgtgcctctgcatctaccaccacttgagagacttactct K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 tctgggacgatctgcggagcctgtgcctcttcagctaccaccgcttgagagacttactct ********** *** *************** ** ******** ***************** 3_649_77/1-1772 tgattgcagcgaggattgtggaacttctgggacacagggggtgggaagccctcaaatatt K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 tgattgtaacgaggattgtggaacttctgggacgcagggggtgggaagccctcaaatatt ****** * ************************ ************************** 3_649_77/1-1772 ggtggaatcttctacagtattggattcaggaactaaagagtagtgctattaatctgataa K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 ggtggaatctcctacagtattggagtcaggaactaaagaatagtgctgttagcttgctca ********** ************* ************** ******* *** ** * * 3_649_77/1-1772 ataccatagcaatagcagtagctgggtggacagatagggttatagaaataggacaaagat K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 atgccacagccatagcagtagctgaggggacagatagggttatagaagtagtacaaggag ** *** *** ************* * ******************** *** **** ** 3_649_77/1-1772 tttgtagagctatacgtaacatacctaggagaatcagacagggcgcagaaaaggctttgc K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 cttgtagagctattcgccacatacctagaagaataagacagggcttggaaaggattttgc ************ ** ********** ***** ********* **** * ***** 3_649_77/1-1772 aataacatggggggcaaatggtcaaaaagtagcatagtgggatggcctcaggttagggaa K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 tataagatgggtggcaagtggtcaaaaagtagtgtggttggatggcctactgtaagggaa **** ***** ***** ************** * ** ********* ** ****** 3_649_77/1-1772 agaataagacgagctcctgctccagcagcaagaggagtaggaccagtatctcaagatttg K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 agaatgagacgag---ctgagccagcagcagatggggtgggagcagcatctcgagacctg ***** ******* *** ********* ** ** *** *** ***** *** ** 3_649_77/1-1772 gataagtatggagcagtcacaagcagtaatacagcagctactaatgctgattgcgcctgg K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 gaaaaacatggagcaatcacaagtagcaatacagcagctaccaatgctgcttgtgcctgg ** ** ******** ******* ** ************** ******* *** ****** 3_649_77/1-1772 ctggaggcgcaaaaggaagaggaggtaggctttccagtcaggccgcaggtacctgtgaga K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 ctagaagcacaagaggaggaggaggtgggttttccagtcacacctcaggtacctttaaga ** ** ** *** **** ******** ** ********** ** ********* * *** 3_649_77/1-1772 ccgatgacatataaggcagctttcgatctcagccactttttaaaagaaaaggggggactg K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 ccaatgacttacaaggcagctgtagatcttagccactttttaaaagaaaaggggggactg ** ***** ** ********* * ***** ****************************** 3_649_77/1-1772 gatgggttaatttactccaagaaaagacaggaaatccttgatctgtgggtctatcacaca K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 gaagggctaattcactcccaacgaagacaagatatccttgatctgtggatctaccacaca ** *** ***** ***** * ****** ** *************** **** ****** 3_649_77/1-1772 caaggctccttccctgattggcagaattataccccagggccagggattagattcccgcta K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 caaggctacttccctgattggcagaactacacaccagggccaggggtcagatatccactg ******* ****************** ** ** ************ * **** ** ** 3_649_77/1-1772 acatttggatggtgctacaagctagtaccagtcgacccagaggaagtagaagaggccaca K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 acctttggatggtgctacaagctagtaccagttgagccagataaggtagaagaggccaat ** ***************************** ** ***** * ************* 3_649_77/1-1772 gagggagagaacaacagcctattacaccctatatgccagcacggaaaggatgatgaggaa K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 aaaggagagaacaccagcttgttacaccctgtgagcctgcatggaatggatgaccctgag * ********** **** * ********* * *** *** **** ****** ** 3_649_77/1-1772 aaagaagtgttaatgtggaagtttgacagtcgcctggctctaacacacagagcccgagag K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 agagaagtgttagagtggaggtttgacagccgcctagcatttcatcacgtggcccgagag * ********** ***** ********* ***** ** * *** ********* 3_649_77/1-1772 ctgcatccggagttctacaaagactgctgaca K02013[Human_immunodeficiency_virus_type_1,_isolate_BRU,/7244-9012 ctgcatccggagtacttcaagaactgctgaca ************* ** *** ********** END HIT-NUMBER=9.1 HIT-NAME=AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.] HIT-ACCESSION=AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.] HIT-ROW-SCORE=1913 HIT-BITS=1913 HIT-GAPS=3 HIT-EVALUE=0.0 HIT-PERCENT-IDENTITY=88.6504799548278 ALLIGNMENT=START CLUSTAL W(1.81) multiple sequence alignment 3_649_77/2-1772 ggacaattggagaagtgaattatataagtataaagtagtaaaaattgaaccattaggagt AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 ggacaattggagaagtgaattatataaatataaagtagtacaaattgaaccattaggagt *************************** ************ ******************* 3_649_77/2-1772 agcacccaccaaggcaaagagaagagtggtgcagagagagaaaagagcagtgggaatagg AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 agcacccaccaaggcaaagagaagagtggtgcagagagaaaaaagagcagtgggaatagg *************************************** ******************** 3_649_77/2-1772 agctgtgttccttgggttcttgggagcagcaggaagcactatgagcgcggcgtcaatcac AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 agctgtgttccttgggttcttgggagcagcaggaagcactatgggcgcagcgtcaatgac ******************************************* **** ******** ** 3_649_77/2-1772 gctgacggtacaggccagacaattattgcctggtatagtgcaacagcagaataatctgct AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 gctgacggtacaggccagacaattattgtctggtatagtgcaacagcagaacaatttgct **************************** ********************** *** **** 3_649_77/2-1772 gagggctattgaggcgcaacaacatctgttgcaactcacagtctggggcatcaagcagct AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 gagggctattgaggcgcaacagcatctgttgcaactcacagtctggggcatcaagcagct ********************* ************************************** 3_649_77/2-1772 ccaggcgagagtcctggctgtggagagatacctaaaggatcaacagctcctggggatttg AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 ccaagcaagagtcctggctgtggaaagatacctaagggatcaacagctcctggggatttg *** ** ***************** ********** ************************ 3_649_77/2-1772 gggttgctctggaaaactcatttgcaccactgctgtgccttggaatactagttggagtaa AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 gggttgctctggaaaactcatttgcaccactgctgtgccttggaatactagttggagtaa ************************************************************ 3_649_77/2-1772 taaatctctagatgacatttggaataacatgacctggatggagtgggaaagagaaattaa AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 taaatctctgagtcagatttggggtaacatgacctggatgcagtgggaaagggaaattga ********* * * ****** **************** ********** ****** * 3_649_77/2-1772 taattacacaggtttaatatacactttaatagaagaatcgcagaaccaacaagaaaagaa AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 taattacacaagcttaatatacaatttaattgaagaatcgcaaaaccaacaagaaaagaa ********** * ********** ****** *********** ***************** 3_649_77/2-1772 tgaacaagaattattggcattagataaatgggcaagtttgtggaattggtttgacatatc AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 tgaacaagaattattggaattagataactgggcaagtttgtggaattggtttagcataac ***************** ********* ************************ **** * 3_649_77/2-1772 aaactggctgtggtatataaaaatattcataatgatagtaggaggcttggtaggtttaag AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 aaattggctgtggtatataaaaatattcataatgatagtaggaggcttggtaggtttaag *** ******************************************************** 3_649_77/2-1772 aataatttttgctgtactttctctagtgaatagagttaggcagggatattcaccattatc AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 aatagtttttgctgtactttctatagtgaatagagttaggcagggatactcaccattatc **** ***************** ************************* *********** 3_649_77/2-1772 atttcagacccgcctcccaacccagaggggacccgacaggcccgaaggaatagaagaaga AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 gtttcagacccgcctcccagccaggaggggacccgacaggcccgaaggaatcgaagaaga ****************** ** *************************** ******** 3_649_77/2-1772 aggtggaaagagagacagagacacatccattcgattagtgaacggattcttagcacttat AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 aggtggagagagagacagagacagatccggtcaattagtggatggattcttagcaattat ******* *************** **** ** ******* * ************ **** 3_649_77/2-1772 ctgggacgacctgaggagcctgtgcctctgcatctaccaccacttgagagacttactctt AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 ctgggtcgacctgcggagcctgtgcctcttcagctaccaccgcttgagagacttactctt ***** ******* *************** ** ******** ****************** 3_649_77/2-1772 gattgcagcgaggattgtggaacttctgggacacagggggtgggaagccctcaaatattg AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 gattgtaacgaggattgtggaacttctgggacgcagagggtgggaagccctcaaatattg ***** * ************************ *** *********************** 3_649_77/2-1772 gtggaatcttctacagtattggattcaggaactaaagagtagtgctattaatctgataaa AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 gtggaatctcctacagtattggattcaggaactaaagaatagtgctgttagcttgctcaa ********* **************************** ******* *** ** * ** 3_649_77/2-1772 taccatagcaatagcagtagctgggtggacagatagggttatagaaataggacaaagatt AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 cgccacagctatagcagtagctgaggggactgatagggttatagaagtattacaaagagc *** *** ************* * **** *************** ** ******* 3_649_77/2-1772 ttgtagagctatacgtaacatacctaggagaatcagacagggcgcagaaaaggctttgca AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 ttgtagagctattctccacatacctagaagaataagacagggcttggaaagggctttgca ************ * ********** ***** ********* **** ********* 3_649_77/2-1772 ataacatggggggcaaatggtcaaaaagtagcatagtgggatggcctcaggttagggaaa AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 ataagatgggtggtaagtggtcaaaaagtagtaaaattggatggcctactgtaagggaaa **** ***** ** ** ************** * * * ********* ** ******* 3_649_77/2-1772 gaataagacgagctcctgctccagcagcaagaggagtaggaccagtatctcaagatttgg AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 gaatgagacgag---ctgagccagcagcagatggggtgggagcagtatctcgagacctgg **** ******* *** ********* ** ** *** ********* *** *** 3_649_77/2-1772 ataagtatggagcagtcacaagcagtaatacagcagctactaatgctgattgcgcctggc AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 aaaaacatggagcaatcacaagtagtaatacagcaactaacaatgctgattgtgcctggc * ** ******** ******* ************ *** *********** ******* 3_649_77/2-1772 tggaggcgcaaaaggaagaggaggtaggctttccagtcaggccgcaggtacctgtgagac AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 tagaagcacaagaggaggagtaggtgggttttccagtcagacctcaggtacctctaagac * ** ** *** **** *** **** ** *********** ** ********* * **** 3_649_77/2-1772 cgatgacatataaggcagctttcgatctcagccactttttaaaagaaaaggggggactgg AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 caatgacttacaaggcagcgttcgatcttagccactttttaaaagaaaaggggggactgg * ***** ** ******** ******** ******************************* 3_649_77/2-1772 atgggttaatttactccaagaaaagacaggaaatccttgatctgtgggtctatcacacac AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 aagggataatttggtcccagaaaagacaagatatccttgatctgtgggtccaccacacac * *** ****** *** ********** ** ****************** * ******* 3_649_77/2-1772 aaggctccttccctgattggcagaattataccccagggccagggattagattcccgctaa AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 aaggctacttccctgattggcagaactacacaccagggccagggatcagatatccactga ****** ****************** ** ** ************** **** ** ** * 3_649_77/2-1772 catttggatggtgctacaagctagtaccagtcgacccagaggaagtagaagaggccacag AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 cctttggatggtgcttcaagctagtaccagtggagccagagaaggtagaagaggccaatg * ************* *************** ** ****** * ************* * 3_649_77/2-1772 agggagagaacaacagcctattacaccctatatgccagcacggaaaggatgatgaggaaa AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 aaggagagaacaacagattgttacaccctgtgagcctgcatgggatggaggacccggaga * ************** * ********* * *** *** ** * *** ** *** * 3_649_77/2-1772 aagaagtgttaatgtggaagtttgacagtcgcctggctctaacacacagagcccgagagc AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 aagaagtgttagtatggaggtttgacagccgcctagcactccgtcacatggcccgagagc *********** * **** ********* ***** ** ** **** ********** 3_649_77/2-1772 tgcatccggagttctacaaagactgctgaca AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/7678-9445 tacatccggagtactacaagaactgctgaca * ********** ****** ********** END HIT-NUMBER=9.2 HIT-NAME=AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.] HIT-ACCESSION=AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.] HIT-ROW-SCORE=1913 HIT-BITS=1913 HIT-GAPS=3 HIT-EVALUE=1e-49 HIT-PERCENT-IDENTITY=82.6347305389222 ALLIGNMENT=START CLUSTAL W(1.81) multiple sequence alignment 3_649_77/1439-1772 tggatgggttaatttactccaagaaaagacaggaaatccttgatctgtgggtctatcaca AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/1-334 tggaagggataatttggtcccagaaaagacaagatatccttgatctgtgggtccaccaca **** *** ****** *** ********** ** ****************** * **** 3_649_77/1439-1772 cacaaggctccttccctgattggcagaattataccccagggccagggattagattcccgc AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/1-334 cacaaggctacttccctgattggcagaactacacaccagggccagggatcagatatccac ********* ****************** ** ** ************** **** ** * 3_649_77/1439-1772 taacatttggatggtgctacaagctagtaccagtcgacccagaggaagtagaagaggcca AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/1-334 tgacctttggatggtgcttcaagctagtaccagtggagccagagaaggtagaagaggcca * ** ************* *************** ** ****** * ************* 3_649_77/1439-1772 cagagggagagaacaacagcctattacaccctatatgccagcacggaaaggatgatgagg AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/1-334 atgaaggagagaacaacagattgttacaccctgtgagcctgcatgggatggaggacccgg ** ************** * ********* * *** *** ** * *** ** ** 3_649_77/1439-1772 aaaaagaagtgttaatgtggaagtttgacagtcgcctggctctaacacacagagcccgag AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/1-334 agaaagaagtgttagtatggaggtttgacagccgcctagcactccgtcacatggcccgag * ************ * **** ********* ***** ** ** **** ******* 3_649_77/1439-1772 agctgcatccggagttctacaaagactgctgaca AF256207[HIV-1_clone_S61G7_from_Spain,_complete_genome.]/1-334 agctacatccggagtactacaagaactgctgaca **** ********** ****** ********** END HIT-NUMBER=10.1 HIT-NAME=U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect HIT-ACCESSION=U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect HIT-ROW-SCORE=1905 HIT-BITS=1905 HIT-GAPS=3 HIT-EVALUE=0.0 HIT-PERCENT-IDENTITY=89.0379008746356 ALLIGNMENT=START CLUSTAL W(1.81) multiple sequence alignment 3_649_77/1-1715 gggacaattggagaagtgaattatataagtataaagtagtaaaaattgaaccattaggag U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 gggacaattggagaagtgaattatataaatataaagtagtaaaaattgaaccattaggag **************************** ******************************* 3_649_77/1-1715 tagcacccaccaaggcaaagagaagagtggtgcagagagagaaaagagcagtgggaatag U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 tagcacccaccaaggcaaagagaagagtggtgcagagagaaaaaagagcagtgggaatag **************************************** ******************* 3_649_77/1-1715 gagctgtgttccttgggttcttgggagcagcaggaagcactatgagcgcggcgtcaatca U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 gagctttgttccttgggttcttgggagcagcaggaagcactatgggcgcagcgtcaatga ***** ************************************** **** ******** * 3_649_77/1-1715 cgctgacggtacaggccagacaattattgcctggtatagtgcaacagcagaataatctgc U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 cgctgacggtacaggccagacaattattgtctggtatagtgcagcagcagaacaatttgc ***************************** ************* ******** *** *** 3_649_77/1-1715 tgagggctattgaggcgcaacaacatctgttgcaactcacagtctggggcatcaagcagc U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 tgagggctattgaggcgcaacagcatctgttgcaactcacagtatggggcatcaagcagc ********************** ******************** **************** 3_649_77/1-1715 tccaggcgagagtcctggctgtggagagatacctaaaggatcaacagctcctggggattt U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 tccaggcaagaatcctggctgtggaaagatacctaaaggatcaacagctcctggggattt ******* *** ************* ********************************** 3_649_77/1-1715 ggggttgctctggaaaactcatttgcaccactgctgtgccttggaatactagttggagta U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 ggggttgctctggaaaactcatttgcaccactgctgtgccttggaatgctagttggagta *********************************************** ************ 3_649_77/1-1715 ataaatctctagatgacatttggaataacatgacctggatggagtgggaaagagaaatta U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 ataaatctctggaacagatttggaatcacacgacctggatggagtgggacagagaaatta ********** ** * ********* *** ****************** ********** 3_649_77/1-1715 ataattacacaggtttaatatacactttaatagaagaatcgcagaaccaacaagaaaaga U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 acaattacacaagcttaatacactccttaattgaagaatcgcaaaaccaacaagaaaaga * ********* * ****** ** * ***** *********** **************** 3_649_77/1-1715 atgaacaagaattattggcattagataaatgggcaagtttgtggaattggtttgacatat U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 atgaacaagaattattggaattagataaatgggcaagtttgtggaattggtttaacataa ****************** ********************************** ***** 3_649_77/1-1715 caaactggctgtggtatataaaaatattcataatgatagtaggaggcttggtaggtttaa U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 caaattggctgtggtatataaaaatattcataatgatagtaggaggcttggtaggtttaa **** ******************************************************* 3_649_77/1-1715 gaataatttttgctgtactttctctagtgaatagagttaggcagggatattcaccattat U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 gaatagtttttgctgtactttctatagtgaatagagttaggcagggacattcaccattat ***** ***************** *********************** ************ 3_649_77/1-1715 catttcagacccgcctcccaacccagaggggacccgacaggcccgaaggaatagaagaag U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 cgtttcagacccacctcccaaccccggggggacccgacaggcccgaaggaatagaagaag * ********** *********** * ********************************* 3_649_77/1-1715 aaggtggaaagagagacagagacacatccattcgattagtgaacggattcttagcactta U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 aaggtggagagagagacagagacagatccattcgattagtgaacggatccttagcactta ******** *************** *********************** *********** 3_649_77/1-1715 tctgggacgacctgaggagcctgtgcctctgcatctaccaccacttgagagacttactct U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 tctgggacgatctgcgaagcctgtgcctcttcagctaccaccgcttgagagacttactct ********** *** * ************* ** ******** ***************** 3_649_77/1-1715 tgattgcagcgaggattgtggaacttctgggacacagggggtgggaagccctcaaatatt U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 tgattgtaacgaggattgtggaacttctgggacgcagggggtgggaagccctcaaatatt ****** * ************************ ************************** 3_649_77/1-1715 ggtggaatcttctacagtattggattcaggaactaaagagtagtgctattaatctgataa U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 ggtggaatctcctacagtattggagtcaggaactaaagaatagtgctgttagcttgctca ********** ************* ************** ******* *** ** * * 3_649_77/1-1715 ataccatagcaatagcagtagctgggtggacagatagggttatagaaataggacaaagat U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 atgccacagccatagcagtagctgaggggacagatagggttatagaagtagtacaaggag ** *** *** ************* * ******************** *** **** ** 3_649_77/1-1715 tttgtagagctatacgtaacatacctaggagaatcagacagggcgcagaaaaggctttgc U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 cttgtagagctattcgccacatacctagaagaataagacagggcttggaaaggattttgc ************ ** ********** ***** ********* **** * ***** 3_649_77/1-1715 aataacatggggggcaaatggtcaaaaagtagcatagtgggatggcctcaggttagggaa U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 tataagatgggtggcaagtggtcaaaaagtagtgtgattggatggcctactgtaagggaa **** ***** ***** ************** * * ********* ** ****** 3_649_77/1-1715 agaataagacgagctcctgctccagcagcaagaggagtaggaccagtatctcaagatttg U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 agaatgagacgag---ctgagccagcagcagatggggtgggagcagcatctcaagacctg ***** ******* *** ********* ** ** *** *** ********* ** 3_649_77/1-1715 gataagtatggagcagtcacaagcagtaatacagcagctactaatgctgattgcgcctgg U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 gaaaaacatggagcaatcacaagtagcaatacagcagctaccaatgctgattgtgcctgg ** ** ******** ******* ** ************** *********** ****** 3_649_77/1-1715 ctggaggcgcaaaaggaagaggaggtaggctttccagtcaggccgcaggtacctgtgaga U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 ctagaagcacaagaggaggaggaggtgggttttccagtcacacctcaggtacctttaaga ** ** ** *** **** ******** ** ********** ** ********* * *** 3_649_77/1-1715 ccgatgacatataaggcagctttcgatctcagccactttttaaaagaaaaggggggactg U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 ccaatgacttacaaggcagctgtagatcttagccactttttaaaagaaaaggggggactg ** ***** ** ********* * ***** ****************************** 3_649_77/1-1715 gatgggttaatttactccaagaaaagacaggaaatccttgatctgtgggtctatcacaca U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 gaagggctaattcactcccaacgaagacaagatatccttgatctgtggatctaccacaca ** *** ***** ***** * ****** ** *************** **** ****** 3_649_77/1-1715 caaggctccttccctgattggcagaattataccccagggccagggattagattcccgcta U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 caaggctacttccctgattggcagaactacacaccaggaccagggatcagatatccactg ******* ****************** ** ** ***** ******** **** ** ** 3_649_77/1-1715 acatttggatggtgctacaagctagtaccagtcgacccagaggaagtagaagaggccaca U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 acctttggatggtgctacaagctagtaccagttgagccagagaagttagaagaagccaac ** ***************************** ** ****** * ******* **** 3_649_77/1-1715 gagggagagaacaacagcctattacaccctatatgccagcacggaaaggatgatgaggaa U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 aaaggagagaacaccagcttgttacaccctgtgagcctgcatggaatggatgacccggag * ********** **** * ********* * *** *** **** ****** *** 3_649_77/1-1715 aaagaagtgttaatgtggaagtttgacagtcgcct U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/7530-9241 agagaagtgttagagtggaggtttgacagccgcct * ********** ***** ********* ***** END HIT-NUMBER=10.2 HIT-NAME=U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect HIT-ACCESSION=U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect HIT-ROW-SCORE=1905 HIT-BITS=1905 HIT-GAPS=3 HIT-EVALUE=1e-36 HIT-PERCENT-IDENTITY=82.9365079365079 ALLIGNMENT=START CLUSTAL W(1.81) multiple sequence alignment 3_649_77/1464-1715 aagacaggaaatccttgatctgtgggtctatcacacacaaggctccttccctgattggca U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/44-295 aagacaagatatccttgatctgtggatctaccacacacaaggctacttccctgattggca ****** ** *************** **** ************* *************** 3_649_77/1464-1715 gaattataccccagggccagggattagattcccgctaacatttggatggtgctacaagct U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/44-295 gaactacacaccaggaccagggatcagatatccactgacctttggatggtgctacaagct *** ** ** ***** ******** **** ** ** ** ******************** 3_649_77/1464-1715 agtaccagtcgacccagaggaagtagaagaggccacagagggagagaacaacagcctatt U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/44-295 agtaccagttgagccagagaagttagaagaagccaacaaaggagagaacaccagcttgtt ********* ** ****** * ******* **** * ********** **** * ** 3_649_77/1464-1715 acaccctatatgccagcacggaaaggatgatgaggaaaaagaagtgttaatgtggaagtt U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/44-295 acaccctgtgagcctgcatggaatggatgacccggagagagaagtgttagagtggaggtt ******* * *** *** **** ****** *** * ********** ***** *** 3_649_77/1464-1715 tgacagtcgcct U12055[Human_immunodeficiency_virus_type_1_isolate_LW12.3_from_infect/44-295 tgacagccgcct ****** ***** END