[Bioperl-l] using Bio::SeqIO to convert from table to genbank format ..... attribute_map example

Mark A Jensen maj at fortinbras.us
Mon Sep 21 15:18:16 UTC 2015


+1!

On Mon, Sep 21, 2015 at 11:04 AM, Fields, Christopher J < cjfields at illinois.edu [cjfields at illinois.edu] > wrote:
Awesome, thanks Brian!
chris
On Sep 21, 2015, at 9:32 AM, Brian Osborne < bosborne11 at verizon.net [bosborne11 at verizon.net] > wrote:
Malcolm,
Done, in master. That “can not write to a generic …” error was due to the fact
that write_seq() is not implemented for SeqIO::table, but someone forgot to put
an “empty” write_seq() method into the module to catch any attempts. Fixed.
Brian O.
On Sep 21, 2015, at 9:18 AM, Brian Osborne < bosborne11 at verizon.net [bosborne11 at verizon.net] > wrote:
Working on this ….
On Sep 14, 2015, at 10:44 AM, Cook, Malcolm < MEC at stowers.org [MEC at stowers.org] > wrote:
'$out = Bio::SeqIO->new(-format => qq{table});
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