[Bioperl-l] frac_identical | Bio::Search::Tiling::MapTiling

[Thiago Venancio]

Hi all,

Bio::Search::Tiling::MapTiling frac_identical() is calculating it over the 
total query length instead of the aligned length in a a BLASTN. Below is 
the code I am using:

while( my $hit = $result->next_hit ) {
     my $tiling = Bio::Search::Tiling::MapTiling->new($hit);
     my $id = $tiling->frac_identical(-type => 'query', -action => 'exact');
}

Does anyone know how to change this behavior ?

Best,
Thiago




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