[Bioperl-l] t/Align/SimpleAlign.t: Bareword "unified_diff" not allowed while "strict subs" in use

[Fields, Christopher J]

On Apr 10, 2015, at 3:12 AM, Adam Sjøgren <adsj at novozymes.com> wrote:
> 
> Adam writes:
> 
>> Searching a little, it seems that "use Test::Differences;" is somehow
>> missing from t/Align/SimpleAlign.t - or is running 'prove' on the .t
>> files not the correct way to run the tests?
> 
> Ok, Test::Differences is included in lib/Bio/Root/Test.pm, so you just
> have to check out Bio-Root as well, them you can run prove like this:
> 
>  $ prove -I../Bio-Root/lib/ -v --timer -r t/Align/SimpleAlign.t
> 
> I guess moving Bio::Root out of bioperl-live is in work in progress,
> which is why README, INSTALL, DEPENDENCIES et al don't mention this.
> 
> 
>  Best regards,
> 
>    Adam

Yes, I’ve been giving serious thought about moving the root modules back into master and focusing on a top-down approach for removing code (which has worked better IMHO).

chris